View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0087-Insertion-1 (Length: 1086)

Name: NF0087-Insertion-1
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0087-Insertion-1
NF0087-Insertion-1
[»] chr7 (12 HSPs)
chr7 (7-1077)||(35169094-35170186)
chr7 (151-244)||(5376284-5376377)
chr7 (111-205)||(24547677-24547773)
chr7 (150-205)||(46766088-46766145)
chr7 (136-200)||(48140457-48140523)
chr7 (137-220)||(36853083-36853168)
chr7 (183-240)||(47073242-47073298)
chr7 (145-205)||(18577486-18577548)
chr7 (175-245)||(18580353-18580423)
chr7 (170-247)||(23781537-23781614)
chr7 (144-194)||(41628866-41628918)
chr7 (144-202)||(46936997-46937057)
[»] chr8 (12 HSPs)
chr8 (136-277)||(30011726-30011869)
chr8 (136-278)||(26819224-26819366)
chr8 (166-246)||(39560339-39560419)
chr8 (162-222)||(3017468-3017528)
chr8 (171-238)||(26762849-26762916)
chr8 (137-246)||(1472585-1472696)
chr8 (166-236)||(16527482-16527552)
chr8 (166-234)||(31188870-31188938)
chr8 (162-196)||(34338716-34338750)
chr8 (181-246)||(25467240-25467305)
chr8 (152-205)||(31141846-31141899)
chr8 (169-202)||(43059472-43059505)
[»] chr5 (11 HSPs)
chr5 (146-246)||(16230755-16230857)
chr5 (169-246)||(18870986-18871063)
chr5 (136-202)||(36261959-36262025)
chr5 (166-246)||(16962169-16962248)
chr5 (173-236)||(16215391-16215454)
chr5 (167-245)||(7517999-7518077)
chr5 (136-202)||(35035587-35035655)
chr5 (147-243)||(7705307-7705403)
chr5 (183-243)||(14004327-14004387)
chr5 (168-251)||(19345926-19346009)
chr5 (166-196)||(36639769-36639799)
[»] chr1 (13 HSPs)
chr1 (152-252)||(14303913-14304015)
chr1 (162-246)||(39086010-39086094)
chr1 (183-252)||(15867621-15867690)
chr1 (166-246)||(24126878-24126957)
chr1 (136-196)||(15954001-15954063)
chr1 (104-245)||(16979583-16979723)
chr1 (183-252)||(36131795-36131865)
chr1 (136-203)||(39723446-39723515)
chr1 (172-246)||(49364384-49364458)
chr1 (136-246)||(45112042-45112154)
chr1 (140-252)||(3242129-3242243)
chr1 (173-219)||(32408089-32408133)
chr1 (195-252)||(15920233-15920290)
[»] chr2 (11 HSPs)
chr2 (136-252)||(10231833-10231951)
chr2 (167-243)||(5129636-5129712)
chr2 (136-277)||(37494094-37494229)
chr2 (167-226)||(44250661-44250720)
chr2 (104-203)||(6863558-6863659)
chr2 (180-278)||(17213752-17213850)
chr2 (166-236)||(44325345-44325415)
chr2 (161-202)||(5747676-5747717)
chr2 (175-244)||(33295059-33295128)
chr2 (139-200)||(36501982-36502043)
chr2 (207-252)||(36886009-36886054)
[»] chr6 (8 HSPs)
chr6 (171-225)||(31650298-31650352)
chr6 (167-232)||(25094709-25094774)
chr6 (162-222)||(18361295-18361355)
chr6 (148-251)||(733559-733664)
chr6 (145-262)||(8782930-8783050)
chr6 (187-232)||(10380761-10380806)
chr6 (166-236)||(22015237-22015307)
chr6 (188-246)||(33433783-33433841)
[»] chr4 (9 HSPs)
chr4 (136-204)||(6468689-6468759)
chr4 (176-246)||(18966004-18966074)
chr4 (168-252)||(15026742-15026826)
chr4 (166-246)||(40611978-40612058)
chr4 (167-246)||(1132144-1132223)
chr4 (186-252)||(7601407-7601473)
chr4 (138-205)||(21570851-21570920)
chr4 (209-247)||(40365557-40365595)
chr4 (146-240)||(6959258-6959354)
[»] scaffold1396 (1 HSPs)
scaffold1396 (147-252)||(1271-1375)
[»] chr3 (2 HSPs)
chr3 (146-202)||(48553065-48553121)
chr3 (169-234)||(49598417-49598482)


Alignment Details
Target: chr7 (Bit Score: 877; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 877; E-Value: 0
Query Start/End: Original strand, 7 - 1077
Target Start/End: Complemental strand, 35170186 - 35169094
Alignment:
Q  7 agttctggatatctgttatgagctgaaataggatcttcacctggatatgtgaagtacaaaatcatatcaaaaccatcactagctcatacttggacgtgtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35170186 agttctggatatctgttatgagctgaaataggatcttcacctggatatgtgaagtacaaaatcatatcaaaaccatcactagctcatacttggacgtgtt 35170087  T
Q  107 taactttgataaaccgtcaatgcaaatacttttacactgtcaacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaacatc 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35170086 taactttgatacaccgtcaatgcaaatacttttacactgtcaacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaacatc 35169987  T
Q  207 tttaataatctgacgattacgattgattgacagtgtaaaatatcttaacagttacagtatatatgaattaaacccttgcaatattgttttgttctcttta 306  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35169986 tttaataatctaacgattacaattgattgacagtgtaaaatatcttaacagttacagtatatatgaattaaacccttgcaatattgttttgttctcttta 35169887  T
Q  307 tttttatatccattaggggtgagttttctacagcaaataactatgtaggtaaaagtagcacatgacaatgataaacagattcaggatcctattgaaaaat 406  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35169886 tttttttatccattaggggtgagttttctacagcaaataactatgtaggtaaaagtagcacatgacaatgataaacaaattcaggatcctattgaaaaat 35169787  T
Q  407 aaccttaattttctatttaatatgatgcacacattaaactgaaaatttgtactttgcagccaatatcatgaactaatttcttacattttcatctctcnnn 506  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  35169786 aaccttaattgtctatttaatatgatgcacacattaaactgaaaatttgtactttgcagccaatatcatgaactaatttcttacattttcatctctcttt 35169687  T
Q  507 nnnnnnnnnnnnnnnctgtatattcctatcaactggcattagaaaacccttttgaagcaggtcggaaggttacacttagaataacattttgagccaaaga 606  Q
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35169686 ttattttttatttttctgtatattcctatcaactggcattagaaaacccttttgaagcaggtcggaaggttacacttagaataacattttgagccaaaga 35169587  T
Q  607 aag----atatgagaatcaaaacctgaatatagaaccgcgtcaacggggaggccttctccaaaatcagccatccatcctctaactccatcatccaccatt 702  Q
    |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35169586 aagatatatatgagaatcaaaacctgaatatagaaccgcgtcaacggggaggccttctccaaaatcagccatccatcctctaactccatcatccaccatt 35169487  T
Q  703 tcaagtagaatctgtttgaaccaagttgcagtttttgggtgagttagatcgagcattcctacatcgaaggcagtatttggaaccatgtatgcattcccat 802  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35169486 tcaagtagaatctgtttgaaccaagttgcagtttttgggtgagttagatcgagcattcctacatcgaaggcagtatttggaaccatgtatgcattcccat 35169387  T
Q  803 tattgtctttcaccaatatgtccaactgttttgcctcctcaaaaaggtttctctttttgttattcttctcatcaacctacagtgtcagagaaaacaatca 902  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35169386 tattgtctttcaccaatatgtccaactgttttgcctcctcaaaaaggtttctctttttgttattcttctcatcaacctacagtgtcagaggaaacaatca 35169287  T
Q  903 tgttagtgacattaccgcaatcgtgatctccctaatatggcacttggactatcattttgtttgac-agaaagaa-------tttgag-aaaatgc-agag 992  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       |||||| ||||||| ||||    
T  35169286 tgttagtgacattaccgcaatcgtgatctccctaatatggcacttggactatcattttgtttgacaagaaagaaatgaagctttgagaaaaatgcaagag 35169187  T
Q  993 -actgttatg-agtacttggact-atatgtgacagtgatta-catatttattcatatttg-agtgat--aagagaagcattac-ggagctaga 1077  Q
     ||||||| | |||||||||||| |||||||||||||||||  ||||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  35169186 aactgttacgaagtacttggactaatatgtgacagtgattataatatttattcatatttgaagtgattaaagagaagcattacaggagctaga 35169094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 5376377 - 5376284
Alignment:
Q  151 aaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaa 244  Q
    |||||| |||||| |||||| ||||||||||||||||||||||| |||||||| | |||||| |||||||||| | |||| ||||| |||||||    
T  5376377 aaatcacaaccaaccatgtgcgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacgatcatgattcattgaaagtgtaa 5376284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 24547677 - 24547773
Alignment:
Q  111 tttgataaaccgtcaatgcaaatacttttacactgtcaacaaatcataaccaatc--atgtgtgactttagaagtagttatgattaaagtcaaacat 205  Q
    ||||||| ||||||| || ||| | |||||||||||||| |||||| ||||||||  || ||||| ||||||||||||||||||| |||||||||||    
T  24547677 tttgatacaccgtcagtgtaaaaagttttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgattgaagtcaaacat 24547773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 46766145 - 46766088
Alignment:
Q  150 caaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaacat 205  Q
    ||||||||||||||||||  ||||||||||||||| || |||||||||||||||||||    
T  46766145 caaatcataaccaatcatatgtgtgactttagaagcaggtatgattaaagtcaaacat 46766088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 48140457 - 48140523
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatcatgtg--tgactttagaagtagttatgattaaagtca 200  Q
    |||||||||||||||| || |||| ||||||||||  ||||||||||||| |||||||| |||||||    
T  48140457 ttttacactgtcaacacattataatcaatcatgtgtatgactttagaagttgttatgataaaagtca 48140523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 36853083 - 36853168
Alignment:
Q  137 tttacactgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgac 220  Q
    |||||| |||||  |||||| ||||||||||  ||||||||||||||||||||||||||| | ||||| || |||| | |||||||    
T  36853083 tttacattgtcagtaaatcacaaccaatcatatgtgtgactttagaagtagttatgattataatcaaatatttttattgatctgac 36853168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 47073298 - 47073242
Alignment:
Q  183 tagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagt 240  Q
    ||||| ||||||||||||||||| |||||||||| ||||||||  |||||||||||||    
T  47073298 tagttttgattaaagtcaaacat-tttaataatccgacgattaaaattgattgacagt 47073242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 18577486 - 18577548
Alignment:
Q  145 gtcaacaaatcataaccaatcatgt--gtgactttagaagtagttatgattaaagtcaaacat 205  Q
    |||||||||||||||  |||||| |  |||||||| |||||||||||| ||||||||||||||    
T  18577486 gtcaacaaatcataattaatcatatatgtgactttcgaagtagttatgtttaaagtcaaacat 18577548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 18580353 - 18580423
Alignment:
Q  175 tttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaa 245  Q
    |||||||||||||||||||||||||| |||| |||||  || ||| ||  | |||||| ||||||||||||    
T  18580353 tttagaagtagttatgattaaagtcatacatttttaactatttgatgacgatgattgaatgacagtgtaaa 18580423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 23781614 - 23781537
Alignment:
Q  170 gtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaat 247  Q
    ||||| || |||||||||| ||  |||||||| ||| ||||| ||| || |||||| |||||||||||||| ||||||    
T  23781614 gtgacatttgaagtagttaagacaaaagtcaatcatttttaagaatttgtcgattatgattgattgacagtttaaaat 23781537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 41628918 - 41628866
Alignment:
Q  144 tgtcaacaaatcataaccaatcatgt--gtgactttagaagtagttatgatta 194  Q
    ||||||||||||||||| | |||| |  |||||||||||||||||||||||||    
T  41628918 tgtcaacaaatcataactattcatatacgtgactttagaagtagttatgatta 41628866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 46936997 - 46937057
Alignment:
Q  144 tgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaa 202  Q
    ||||||||||||| || |||||||  ||||||||||||||| | ||||||||||| |||||    
T  46936997 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 46937057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 136 - 277
Target Start/End: Original strand, 30011726 - 30011869
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgat 233  Q
    ||||||||||||||||||||| || |||||||  |||||| ||||||||||||||||||| ||||||||||| ||||||  | |||| | || |||||||    
T  30011726 ttttacactgtcaacaaatcaaaatcaatcatatgtgtgattttagaagtagttatgattgaagtcaaacatttttaatgttatgacaagtatgattgat 30011825  T
Q  234 tgacagtgtaaaatatcttaacagttacagtatatatgaattaa 277  Q
    ||||||||||||| || || | | | ||||| ||||||||||||    
T  30011826 tgacagtgtaaaaaatgtttaaactgacagtgtatatgaattaa 30011869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 26819366 - 26819224
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattg 235  Q
    ||||||||| | | ||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||| |||||| |||| ||||||   ||||||||    
T  26819366 ttttacactattagcaaatcacaaccaatcatgtgtgactttagaagtagttgcgataaaagtcaaacatttttaatgatctaacgattgtaattgattg 26819267  T
Q  236 acagtgtaaaatatcttaacagttacagtatatatgaattaaa 278  Q
    |  |||||||  ||||| ||| | || || ||||| |||||||    
T  26819266 aatgtgtaaataatctttacactgacggtgtatattaattaaa 26819224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 39560339 - 39560419
Alignment:
Q  166 atgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||| || ||  |||||||||||| ||  |||||||||    
T  39560339 atgtatgactttagaagtagttatgattaaagtcaaacatttttaatgatatggtgattacgattgactgttagtgtaaaa 39560419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 3017468 - 3017528
Alignment:
Q  162 aatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacga 222  Q
    ||||||||||||||||  |||||||||||||||||||||||| | |||||| |||||||||    
T  3017468 aatcatgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 3017528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 26762916 - 26762849
Alignment:
Q  171 tgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgaca 238  Q
    |||||||||||||| |||||||||||||||||| | |||| | |||||| ||||| ||||||||||||    
T  26762916 tgactttagaagtaattatgattaaagtcaaacgtttttactgatctgaggattatgattgattgaca 26762849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 1472696 - 1472585
Alignment:
Q  137 tttacactgtcaacaaatcataaccaatcatg--tgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgatt 234  Q
    ||||||||||| |||||||| ||||| ||||   | |||||||||||  | ||||| ||||||| |||||| || |||||||||| ||||| ||||||||    
T  1472696 tttacactgtcgacaaatcacaaccactcatacttatgactttagaaacaattatggttaaagttaaacattttcaataatctgatgattatgattgatt 1472597  T
Q  235 gacagtgtaaaa 246  Q
    | ||||| ||||    
T  1472596 gccagtgcaaaa 1472585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 16527482 - 16527552
Alignment:
Q  166 atgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattga 236  Q
    |||| |||||||||||||||||| || |||| |||||| |  ||||| |||||| ||||||||||||||||    
T  16527482 atgtatgactttagaagtagttacgactaaactcaaacgttcttaatgatctgatgattacgattgattga 16527552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 31188938 - 31188870
Alignment:
Q  166 atgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgatt 234  Q
    |||||||||||| |||||| |||||||| |||| |||||| | |||| ||||||| |||| ||||||||    
T  31188938 atgtgtgactttcgaagtaattatgattgaagttaaacatttgtaatgatctgacaattatgattgatt 31188870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 34338716 - 34338750
Alignment:
Q  162 aatcatgtgtgactttagaagtagttatgattaaa 196  Q
    ||||||||||||||||| |||||||||||||||||    
T  34338716 aatcatgtgtgactttaaaagtagttatgattaaa 34338750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 25467305 - 25467240
Alignment:
Q  181 agtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    ||||||||||||| ||||||||||| ||| || || ||||| ||| ||| |||||||| |||||||    
T  25467305 agtagttatgatttaagtcaaacattttttatgatatgacggttatgatggattgacaatgtaaaa 25467240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 31141846 - 31141899
Alignment:
Q  152 aatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaacat 205  Q
    ||||||||||||  |||||||||||| |||||| |||||||| |||| ||||||    
T  31141846 aatcataaccaactatgtgtgactttcgaagtaattatgattgaagttaaacat 31141899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 43059505 - 43059472
Alignment:
Q  169 tgtgactttagaagtagttatgattaaagtcaaa 202  Q
    ||||||||||||||||||||| ||||||||||||    
T  43059505 tgtgactttagaagtagttattattaaagtcaaa 43059472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 16230755 - 16230857
Alignment:
Q  146 tcaacaaatcataaccaatcatgtgt--gactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgta 243  Q
    ||||||||||| |||||||||| |||  || ||||||||||||||||||||||||||||||| || ||| ||| | |||||||||| |||||||||||||    
T  16230755 tcaacaaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaacattttaaatgatcagtcgattacgatcgattgacagtgta 16230854  T
Q  244 aaa 246  Q
    |||    
T  16230855 aaa 16230857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 18871063 - 18870986
Alignment:
Q  169 tgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    ||||||||||||||||||||| ||||| ||||||| | |||||| ||||||| ||||||||||| |||| | ||||||    
T  18871063 tgtgactttagaagtagttatcattaaggtcaaacgtgtttaatgatctgacaattacgattgaatgacggagtaaaa 18870986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 36261959 - 36262025
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaa 202  Q
    |||||||| |||| ||||||| || |||| || ||||||||||||||||||||||||||||| ||||    
T  36261959 ttttacaccgtcagcaaatcagaaacaattatatgtgactttagaagtagttatgattaaagccaaa 36262025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 16962248 - 16962169
Alignment:
Q  166 atgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    ||||| |||||||||| ||||||||||||||||||||| | |||||| |||| || | || ||||||| ||||||||||||    
T  16962248 atgtgcgactttagaaatagttatgattaaagtcaaacgt-tttaatgatctaacaactatgattgatcgacagtgtaaaa 16962169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 16215454 - 16215391
Alignment:
Q  173 actttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattga 236  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||| | |||| |||| |||||    
T  16215454 actttagaagtagttacgattcaagtcaaacatttttaataatctgtcaattatgattcattga 16215391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 7517999 - 7518077
Alignment:
Q  167 tgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaa 245  Q
    ||||||||||||  ||| |||||||| |||||||||||| ||| || |||| ||  ||| |||||||||||||||||||    
T  7517999 tgtgtgactttaagagtggttatgatgaaagtcaaacattttttatgatctaacagttatgattgattgacagtgtaaa 7518077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 35035655 - 35035587
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaa 202  Q
    ||||||| |||||  |||||| ||||||||||  |||||| |||||||||||||||||||||| |||||    
T  35035655 ttttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttatgattaaaatcaaa 35035587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 7705403 - 7705307
Alignment:
Q  147 caacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgta 243  Q
    ||||| |||| ||| ||||||||||||||||| |||| |||||||| |||||||||  | |  ||| | |||||  ||| |||||||||||||||||    
T  7705403 caacacatcacaacaaatcatgtgtgactttaaaagtggttatgataaaagtcaaatgtttccaatgacctgactgttatgattgattgacagtgta 7705307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 14004387 - 14004327
Alignment:
Q  183 tagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgta 243  Q
    |||||||||||||||||||  || || ||| |||| ||||||| |||||||||||||||||    
T  14004387 tagttatgattaaagtcaattattttaaatgatctcacgattatgattgattgacagtgta 14004327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 19346009 - 19345926
Alignment:
Q  168 gtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaatatct 251  Q
    ||||||||||| || || |||| |||||||| ||| || ||| ||||| ||||||| | ||||||||||| |||||||| ||||    
T  19346009 gtgtgactttaaaattaattattattaaagttaaatattttttataatttgacgatcatgattgattgacggtgtaaaaaatct 19345926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 196
Target Start/End: Original strand, 36639769 - 36639799
Alignment:
Q  166 atgtgtgactttagaagtagttatgattaaa 196  Q
    |||||||||||||||||||||||||||||||    
T  36639769 atgtgtgactttagaagtagttatgattaaa 36639799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 14304015 - 14303913
Alignment:
Q  152 aatcataaccaatcatgtg--tgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaatat 249  Q
    ||||| |||||||||| ||  |||||||| |||||||||||||||||||||||| | | |||  ||||||||||   |||||||||||||||||||| ||    
T  14304015 aatcacaaccaatcatatgagtgactttaaaagtagttatgattaaagtcaaacttttataacgatctgacgatgctgattgattgacagtgtaaaaaat 14303916  T
Q  250 ctt 252  Q
    |||    
T  14303915 ctt 14303913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 39086094 - 39086010
Alignment:
Q  162 aatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    ||||||||||||||||||||||| |||| ||| ||| ||||||| ||||||||| |||| |||| ||| | |||| |||||||||    
T  39086094 aatcatgtgtgactttagaagtaattataattgaagacaaacatttttaataatttgacaattatgatcggttgatagtgtaaaa 39086010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 15867621 - 15867690
Alignment:
Q  183 tagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaatatctt 252  Q
    ||||||||||||||||||||||  |||||| || ||||||||| |||||||||||  ||||||| |||||    
T  15867621 tagttatgattaaagtcaaacagttttaatgatatgacgattatgattgattgacgttgtaaaaaatctt 15867690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 24126957 - 24126878
Alignment:
Q  166 atgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    |||| ||| |||||||||||||||| |||||||||||  | |||||| |||||| ||||| |||||||||| |||||||||    
T  24126957 atgtttgattttagaagtagttatgtttaaagtcaaa-ttttttaatgatctgatgattaagattgattgatagtgtaaaa 24126878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 15954001 - 15954063
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatc--atgtgtgactttagaagtagttatgattaaa 196  Q
    |||||||||||||| |||||| || |||||  || ||||||||||||||||||||||||||||    
T  15954001 ttttacactgtcaataaatcagaatcaatcgtatttgtgactttagaagtagttatgattaaa 15954063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 245
Target Start/End: Original strand, 16979583 - 16979723
Alignment:
Q  104 gtttaactttgataaaccgtcaatgcaaatacttttacactgtcaacaaatcataaccaatcatgt--gtgactttagaagtagttatgattaaagtcaa 201  Q
    |||||| ||||||| || |||| || ||| |  |||||||||||||||||||| ||||||  || |  ||||||||||||||   ||||| | |||||||    
T  16979583 gtttaattttgatacactgtcagtgtaaaaagatttacactgtcaacaaatcacaaccaacaatatatgtgactttagaagt---tatgaatgaagtcaa 16979679  T
Q  202 acatctttaataatctgacgattacgattgattgacagtgtaaa 245  Q
    |||| ||||| || || ||| ||  |||||||||||||||||||    
T  16979680 acatttttaaaaacctaacggttttgattgattgacagtgtaaa 16979723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 36131795 - 36131865
Alignment:
Q  183 tagttatgattaaagtcaaacatctttaataatctgacgattacga-ttgattgacagtgtaaaatatctt 252  Q
    ||||||| |||||| |||||||| ||||||||||| | |||||||| ||| |||||| |||||||||||||    
T  36131795 tagttataattaaaatcaaacatttttaataatctaatgattacgatttgtttgacattgtaaaatatctt 36131865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 39723515 - 39723446
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatc--atgtgtgactttagaagtagttatgattaaagtcaaac 203  Q
    |||||||| |||||||||||| ||||| ||  ||||| ||||||| ||||||||||||||| ||||||||    
T  39723515 ttttacacagtcaacaaatcacaaccattcctatgtgcgactttaaaagtagttatgattagagtcaaac 39723446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 49364458 - 49364384
Alignment:
Q  172 gactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    |||||||||| || ||| |||||||||||||| | |||||||||||||  |||| ||||||| |||| |||||||    
T  49364458 gactttagaaataattacgattaaagtcaaacctttttaataatctgataattatgattgatggacaatgtaaaa 49364384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 45112154 - 45112042
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatcatgtgtg--actttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgat 233  Q
    ||||||| ||||||||||||| |||| ||||| |||   |||||| || ||||||| ||||||||||||||| || || ||||| | ||||| |||| ||    
T  45112154 ttttacagtgtcaacaaatcacaaccgatcatatgtataactttaaaaatagttataattaaagtcaaacattttaaacaatctcatgattatgatttat 45112055  T
Q  234 tgacagtgtaaaa 246  Q
    ||| | |||||||    
T  45112054 tgaaaatgtaaaa 45112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 3242129 - 3242243
Alignment:
Q  140 acactgtcaacaaatcataaccaatc--atgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgac 237  Q
    ||||||| | ||||||||||||||||  |||| |||||||||||| ||| || ||||||||| ||| | |||| | |||||||  ||  |||||||| ||    
T  3242129 acactgttagcaaatcataaccaatcttatgtctgactttagaaggagtgataattaaagtctaacgtttttattgatctgacagttctgattgattaac 3242228  T
Q  238 agtgtaaaatatctt 252  Q
    ||| ||||| |||||    
T  3242229 agtttaaaaaatctt 3242243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 32408133 - 32408089
Alignment:
Q  173 actttagaagtagttatgattaaagtcaaacatctttaataatctga 219  Q
    |||||||||||||||||||||||||||||||   |||||||||||||    
T  32408133 actttagaagtagttatgattaaagtcaaac--gtttaataatctga 32408089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 15920233 - 15920290
Alignment:
Q  195 aagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaatatctt 252  Q
    ||||||||| | |||||| |||| ||||||| ||||||||||| |||||||| |||||    
T  15920233 aagtcaaacttatttaatgatctcacgattatgattgattgacggtgtaaaaaatctt 15920290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 10231833 - 10231951
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgat 233  Q
    |||||||||||| ||| || | || |||||||  |||||| ||||||| |||||||||| |||||||||    |||||| |||||| ||||  |||||||    
T  10231833 ttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttatgataaaagtcaaatgattttaatgatctgatgattgtgattgat 10231932  T
Q  234 tgacagtgtaaaatatctt 252  Q
    ||||||| |||||||||||    
T  10231933 tgacagtataaaatatctt 10231951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 5129712 - 5129636
Alignment:
Q  167 tgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgta 243  Q
    |||||||||||||||||| |||||||||| ||||||  | ||| || || ||||| |||||||||| ||||| ||||    
T  5129712 tgtgtgactttagaagtatttatgattaaggtcaaatgttttttatgatatgacggttacgattgactgacaatgta 5129636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 277
Target Start/End: Original strand, 37494094 - 37494229
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgat 233  Q
    ||||||||||||| || |||| ||||||||||   |||||||||| ||||||||| ||| ||| |||||||| ||||        ||  ||| |||||||    
T  37494094 ttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaacatgttta--------acagttatgattgat 37494185  T
Q  234 tgacagtgtaaaatatcttaacagttacagtatatatgaattaa 277  Q
    ||||||||||||| || || ||| | ||||| ||||||||||||    
T  37494186 tgacagtgtaaaacatattcacactgacagtgtatatgaattaa 37494229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 44250661 - 44250720
Alignment:
Q  167 tgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattac 226  Q
    ||||||||||||||| ||||||||||||||  ||||||| |||||| | |||| ||||||    
T  44250661 tgtgtgactttagaaatagttatgattaaaagcaaacatttttaatgagctgaagattac 44250720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 6863659 - 6863558
Alignment:
Q  104 gtttaactttgataaaccgtcaatgcaaatacttttacactgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaa 201  Q
    |||||| ||||||| ||| ||||  |||| | ||||||||| |||| |||||||||| | ||||  |||||||||||||| || ||||||| ||||| ||    
T  6863659 gtttaattttgatagaccatcaaaacaaaaagttttacactatcaataaatcataacgagtcatttgtgtgactttagaaatatttatgatcaaagttaa 6863560  T
Q  202 ac 203  Q
    ||    
T  6863559 ac 6863558  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 17213752 - 17213850
Alignment:
Q  180 aagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaatatcttaacagttacagtatatatgaattaaa 278  Q
    ||||| ||||||| ||||| |||| | |||||  || |||| |||| |||||||||||||| |||| |||||| ||| | ||| | |||||||||||||    
T  17213752 aagtaattatgatcaaagtaaaacgtttttaacgatttgacaattatgattgattgacagtataaactatctttacactgacaatgtatatgaattaaa 17213850  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 44325345 - 44325415
Alignment:
Q  166 atgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattga 236  Q
    |||||| ||||||||| ||| |||||||||||||  |||| |||||| || | ||||||| ||||||||||    
T  44325345 atgtgtaactttagaaatagatatgattaaagtcttacatttttaatgatataacgattatgattgattga 44325415  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 5747676 - 5747717
Alignment:
Q  161 caatcatgtgtgactttagaagtagttatgattaaagtcaaa 202  Q
    |||||||||||| |||||||  ||||||||||||||||||||    
T  5747676 caatcatgtgtggctttagacatagttatgattaaagtcaaa 5747717  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 33295059 - 33295128
Alignment:
Q  175 tttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaa 244  Q
    |||| |||||||||||||||| ||||||||| |||||| ||   |||||||| ||| |||||| ||||||    
T  33295059 tttataagtagttatgattaacgtcaaacatttttaatgatagaacgattacaatttattgacggtgtaa 33295128  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 36502043 - 36501982
Alignment:
Q  139 tacactgtcaacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtca 200  Q
    ||||||| |||||||||| || ||||||| ||| | |||| ||||| |||||||||||||||    
T  36502043 tacactgccaacaaatcacaatcaatcatatgtaagtttacaagtaattatgattaaagtca 36501982  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 36886054 - 36886009
Alignment:
Q  207 tttaataatctgacgattacgattgattgacagtgtaaaatatctt 252  Q
    |||||| | |||||||||| |||||||||| |||||||||||||||    
T  36886054 tttaatgacctgacgattatgattgattgatagtgtaaaatatctt 36886009  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 31650352 - 31650298
Alignment:
Q  171 tgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgatta 225  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  31650352 tgactttagaagtagttatgattaaagtcaaacatttttaatgatccgacaatta 31650298  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 25094709 - 25094774
Alignment:
Q  167 tgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattga 232  Q
    |||||||||||| ||||| |||||||||||||||||||| |||||| ||  |||||||| ||||||    
T  25094709 tgtgtgactttaaaagtacttatgattaaagtcaaacatgtttaatgattagacgattatgattga 25094774  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 18361295 - 18361355
Alignment:
Q  162 aatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacga 222  Q
    ||||||||||||||||  ||||||||||||||||||| |||| | |||||| |||||||||    
T  18361295 aatcatgtgtgactttcaaagtagttatgattaaagttaaacgtttttaatgatctgacga 18361355  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 733664 - 733559
Alignment:
Q  148 aacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaa 245  Q
    ||||||||| |||||| |||  ||||||||||||||||||||| ||||||||||  || | |||||| |||| ||| ||| ||||  |||||| ||||||    
T  733664 aacaaatcacaaccaaccatacgtgtgactttagaagtagttacgattaaagtcggacgtttttaatgatctaacggttatgattatttgacaatgtaaa 733565  T
Q  246 atatct 251  Q
    | ||||    
T  733564 aaatct 733559  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 8783050 - 8782930
Alignment:
Q  145 gtcaacaaatcataaccaatcatgtgt--gactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacga---ttgattgacag 239  Q
    |||||||||||| |||||||||| | |  |||||| |||||||||||||||||||||||  || |||||| ||| ||||||||| |   | |||||||||    
T  8783050 gtcaacaaatcacaaccaatcatatatatgacttttgaagtagttatgattaaagtcaa--atttttaatgatcggacgattacaatcgtcgattgacag 8782953  T
Q  240 tgtaaaatatcttaacagttaca 262  Q
    |||||  |||||| ||| |||||    
T  8782952 tgtaatttatctttacacttaca 8782930  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 10380761 - 10380806
Alignment:
Q  187 tatgattaaagtcaaacatctttaataatctgacgattacgattga 232  Q
    |||||||||||||||| || ||||||||| ||||||||||||||||    
T  10380761 tatgattaaagtcaaatatgtttaataatttgacgattacgattga 10380806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 22015237 - 22015307
Alignment:
Q  166 atgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattga 236  Q
    |||||| ||||||||| ||| |||||||||||||  |||| |||||| || | ||||||| ||||||||||    
T  22015237 atgtgtaactttagaaatagatatgattaaagtcttacatttttaatgatataacgattatgattgattga 22015307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 33433841 - 33433783
Alignment:
Q  188 atgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    |||||||| |||| || | |||||| |||||| |||||||||||||||| |||||||||    
T  33433841 atgattaaggtcagacgtttttaatgatctgatgattacgattgattgagagtgtaaaa 33433783  T

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Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 6468759 - 6468689
Alignment:
Q  136 ttttacactgtcaacaaatcataaccaatcatgtgt--gactttagaagtagttatgattaaagtcaaaca 204  Q
    ||||||||||||||||||||| |||||  ||| |||  ||||||||||||| ||| |||||||||||||||    
T  6468759 ttttacactgtcaacaaatcacaaccacgcatatgtatgactttagaagtaattaagattaaagtcaaaca 6468689  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 18966004 - 18966074
Alignment:
Q  176 ttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    |||||| |||||| |||||||||||||||| |||||| || ||||||||| ||| |||| ||| |||||||    
T  18966004 ttagaattagttacgattaaagtcaaacatttttaatgatatgacgattatgatcgattaacaatgtaaaa 18966074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 15026742 - 15026826
Alignment:
Q  168 gtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaatatctt 252  Q
    ||||||||||| ||||||| ||||||  | ||||| || || ||  ||||||||||||||||||| |||| |||||||| |||||    
T  15026742 gtgtgactttataagtagtaatgattctaatcaaatattttaaacgatctgacgattacgattgactgacggtgtaaaaaatctt 15026826  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 40611978 - 40612058
Alignment:
Q  166 atgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    |||||| | |||||||||| |||||||| ||||||||||| ||  || ||||   ||||||||||||| ||||||||||||    
T  40611978 atgtgtaattttagaagtatttatgattgaagtcaaacattttgtatgatctattgattacgattgatagacagtgtaaaa 40612058  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 1132223 - 1132144
Alignment:
Q  167 tgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    |||||| |||||||| |||||||||| |||||||||  | | |||| |||||||| ||| |||||||||||  |||||||    
T  1132223 tgtgtgtctttagaattagttatgataaaagtcaaatgtttctaatgatctgacggttatgattgattgacgatgtaaaa 1132144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 7601407 - 7601473
Alignment:
Q  186 ttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaatatctt 252  Q
    |||| ||||||||||| | | ||||||||  | ||||||| |||||||||||||||||||| |||||    
T  7601407 ttataattaaagtcaaccctttttaataaaataacgattatgattgattgacagtgtaaaaaatctt 7601473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 21570920 - 21570851
Alignment:
Q  138 ttacactgtcaacaaatcataaccaatcatgtgtg--actttagaagtagttatgattaaagtcaaacat 205  Q
    ||||| ||||| || |||| |||||||||||||||  ||||||||||| || ||||| ||||||||||||    
T  21570920 ttacattgtcagcacatcacaaccaatcatgtgtgtgactttagaagtcgtcatgataaaagtcaaacat 21570851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 40365557 - 40365595
Alignment:
Q  209 taataatctgacgattacgattgattgacagtgtaaaat 247  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  40365557 taataatcggacgattatgattgattgacagtgtaaaat 40365595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 6959354 - 6959258
Alignment:
Q  146 tcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagt 240  Q
    ||||||||||| ||||||||||  ||||||||| |||||||||||  |||||||| |||| | ||| || || ||| ||||||  |||||| |||||    
T  6959354 tcaacaaatcacaaccaatcatatgtgtgacttaagaagtagttactattaaagtaaaaccttttttatgatttgatgattacttttgattaacagt 6959258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1396 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold1396
Description:

Target: scaffold1396; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 1375 - 1271
Alignment:
Q  147 caacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgattgacagtgtaaaa 246  Q
    |||||||||| ||| |||||| || ||| |||||| |||||||||| || ||||||| | |||||| || |||| |||| ||||||||||||  ||||||    
T  1375 caacaaatcacaactaatcatatgcgacattagaaatagttatgataaatgtcaaac-tgtttaatgatatgaccattatgattgattgacaacgtaaaa 1277  T
Q  247 tatctt 252  Q
     |||||    
T  1276 aatctt 1271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 48553065 - 48553121
Alignment:
Q  146 tcaacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagtcaaa 202  Q
    ||||||||||| || ||||||| |||||||||||||||  ||||||||||| |||||    
T  48553065 tcaacaaatcacaatcaatcatatgtgactttagaagtttttatgattaaattcaaa 48553121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 49598482 - 49598417
Alignment:
Q  169 tgtgactttagaagtagttatgattaaagtcaaacatctttaataatctgacgattacgattgatt 234  Q
    |||||||||| ||||||||| |||| |||| ||| || |||||||||||||  |||| ||||||||    
T  49598482 tgtgactttaaaagtagttacgattgaagttaaagatttttaataatctgataattatgattgatt 49598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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