View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0087-Insertion-10 (Length: 448)
Name: NF0087-Insertion-10
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 105 - 414
Target Start/End: Original strand, 1704481 - 1704793
Alignment:
| Q |
105 |
taggtcatttggag--ggagtgatataagagataaggtgatgtctatgttcgactactctactaacattcattataaatt-atttgtcnnnnnnnnnnnn |
201 |
Q |
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| T |
1704481 |
taggtcatttggagagggagtgatataagagataaggtgatgtctatgttcgactactctactaacattcattataaatttatttgtcaaaataaaaata |
1704580 |
T |
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| Q |
202 |
nnnnnctcattataaattttatataatcaattctttcnnnnnnnggtaatatcattatagccacttctacacatttattgttaaaacatagatattttta |
301 |
Q |
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| T |
1704581 |
aaaaattcattataaattttatataatcaattctttctttttttggtaatatcattatagctacttctacacatttatcgttaaaacatagatattttta |
1704680 |
T |
|
| Q |
302 |
ttttgtgtgaagctcgtgtttttctaacttcaattttgtttaattcaaaaacgatttcgtgccctaatttctaacatatagttatattaaaagagtagtg |
401 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| || |||||||||||||||| |
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| T |
1704681 |
ttttgtgtgaagctcgtgtttttctaacttcaattttatttaattcaaaaacaatttcgtgccctaatttctaatgtataattctattaaaagagtagtg |
1704780 |
T |
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| Q |
402 |
tttgcttgaaaca |
414 |
Q |
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||||||||||||| |
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| T |
1704781 |
tttgcttgaaaca |
1704793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 1704381 - 1704420
Alignment:
| Q |
8 |
tgtgtctatgtgtatatatagatataagaagaagaagaag |
47 |
Q |
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| T |
1704381 |
tgtgtctatgtgtatatatagacataagaagaagaagaag |
1704420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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