View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0087-Insertion-11 (Length: 447)
Name: NF0087-Insertion-11
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087-Insertion-11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 447
Target Start/End: Complemental strand, 36048149 - 36047709
Alignment:
| Q |
7 |
aattgttagggttagtgggagaagtgaactgttgatggaaatggtaggttctatgaggagagacatcgaaacgaaggacgggccaggaatactcttcgat |
106 |
Q |
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| T |
36048149 |
aattgttagggttagtgggagaagtgaactgttgatggaaatggtaggttctatgaggagagacatcgaaacgaaggacgggccaggaatactcttcgat |
36048050 |
T |
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| Q |
107 |
ttcgttggggatagatgcgtcgggttggagttcaattacctcttctgcttcttctcccattgttattcctcctcctccaacccacaatgttgcagctgga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36048049 |
ttcgttggggatagatgcgtcgggttggagttcaattacctcttctgcttcttctcccattgttattcctcctcctccaacccactatgttgcagctgga |
36047950 |
T |
|
| Q |
207 |
aactcgacttcaactgtaagcgccaaaactcagtgttcctctctcagctggaaactcgacttctctgaccattttaaataaatctcgtaagacnnnnnnn |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36047949 |
aactcgacttcaactgtaagcgccaaaactcagtgttcctctctcagctggaaactcgacttctctgaccattttaaataaatctcgtaagac-tttttt |
36047851 |
T |
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| Q |
307 |
nnnnnnnnnnnnnaattgatataaagtgtgaaataaataagtttttcgtttgattttaatccttacaaataaaaatgaatgttttcatctt-nnnnnnnt |
405 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36047850 |
ttttttttttttcaattgataaaaagtgtgaaataaataagtttttcgtttgattttaatccttacaaataaaaatgaatgttttcatcttaaaaaaaat |
36047751 |
T |
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| Q |
406 |
atattatttcacttttggttcttattgaacataattttaaca |
447 |
Q |
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| T |
36047750 |
atattatttcacttttggttcttattgaacataattttaaca |
36047709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 41609368 - 41609328
Alignment:
| Q |
355 |
tttgattttaatccttacaaataaaaatgaatgttttcatc |
395 |
Q |
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|||||||||||||| || |||||||| |||||||||||||| |
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| T |
41609368 |
tttgattttaatccctataaataaaattgaatgttttcatc |
41609328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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