View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0087-Insertion-12 (Length: 444)
Name: NF0087-Insertion-12
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087-Insertion-12 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 225 - 444
Target Start/End: Complemental strand, 33225928 - 33225715
Alignment:
| Q |
225 |
aaggaaccatattgtaagcttgacggcaacttttattagcatataaaacaatcttcttcttcttcttttgtcaggagctagaaagaatcctaaacagtaa |
324 |
Q |
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| T |
33225928 |
aaggaaccatattgtaagcttgacggcaacttttattagcatataaaacaatcttcttcttcttcttttgtcagaagctaaaaagaatcctaaaca---- |
33225833 |
T |
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| Q |
325 |
cacacaacaacaagaatataagagaatataaatcatatcaaatagtatctgatgcaattggtctctaaacgtgacacacgctgcggtgatgtcgtgttca |
424 |
Q |
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| T |
33225832 |
--cacaacaacaagaatatgagagaatataaatcatatcaagtagtatctgatgcaattggtctctaaacgtgacacacgctgcggtgatgtcgtgttca |
33225735 |
T |
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| Q |
425 |
ttacatcgaaagaactggga |
444 |
Q |
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|||||||||||||||||||| |
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| T |
33225734 |
ttacatcgaaagaactggga |
33225715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 225 - 430
Target Start/End: Complemental strand, 33217994 - 33217795
Alignment:
| Q |
225 |
aaggaaccatattgtaagcttgacggcaacttttattagcatataaaacaatcttcttcttcttcttttgtcaggagctagaaagaatcctaaacagtaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
33217994 |
aaggaaccatattgtaagcttgacggcaacttttattagcatataaaacaatcttcttcttcttcttttgtcagaagctaaaaagaatcctaaaca---- |
33217899 |
T |
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| Q |
325 |
cacacaacaacaagaatataagagaatataaatcatatcaaatagtatctgatgcaattggtctctaaacgtgacacacgctgcggtgatgtcgtgttca |
424 |
Q |
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| T |
33217898 |
--cacaacaacaagaatatgagagaatataaatcatatcaagtagtatctgatgcaattggtctctaaacgtgacacacgctgcggtgatgtcgtgttta |
33217801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 33226120 - 33225908
Alignment:
| Q |
7 |
aaacagacgcttgcaaaaataaataatttaagtgataaatctaggggaacgcttttccttcacacnnnnnnnnnnnt-----ccaagggaacgtttgtgt |
101 |
Q |
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| T |
33226120 |
aaacagacgcttgcaaaaataaataatttaagtgataaatctaagggaacg-ttttccttcgcacaaaaaaaaatataaaatccaagggaacgtttgtgt |
33226022 |
T |
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| Q |
102 |
aaaaatattcattttgtgtgaaaatatttatagaacgttagcctactatgatttattcaacaaaataaataaaaatattgtaattttcttttaaaggaac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33226021 |
aaaaatattcattttgtgtgaaaatatttatagaacgttagcctactatgatttattcaacaaaataaataaaaatattgtaattttcttttaaaggaac |
33225922 |
T |
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| Q |
202 |
catattgtaagctt |
215 |
Q |
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| T |
33225921 |
catattgtaagctt |
33225908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 33218045 - 33217974
Alignment:
| Q |
143 |
cctactatgatttattcaacaaaataaataaaaatattgtaattttcttttaaaggaaccatattgtaagctt |
215 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33218045 |
cctactatgatt-attcaacaaaataaataaaaatattgtaattttcttttaaaggaaccatattgtaagctt |
33217974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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