View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0087-Insertion-14 (Length: 355)
Name: NF0087-Insertion-14
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087-Insertion-14 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
| [»] scaffold0090 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 1090869 - 1090521
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1090869 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgc |
1090770 |
T |
|
| Q |
108 |
ccatccgtagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactc-aatagatttctcatgtgttgtattcaagttgttgcat |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
1090769 |
ccatctgtagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactctaagagatttctcatgtgttgtattcaagttgttgcat |
1090670 |
T |
|
| Q |
207 |
gcatgtataccttatacactggtccaaagccaccttctccaagtttgttatagttcgaaaagtgatttgtggcacttatcattgtagaaatattgaagaa |
306 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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|
| T |
1090669 |
gcatgtttaccttatatactggtccaaagccaccttctccaagtttgttatagttcgaaaagtcatttgtggcacttatcattgtagaaatattgaacaa |
1090570 |
T |
|
| Q |
307 |
aggaagctcaaaatcttgttggtcttcatattttatttcggttaaagtg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1090569 |
aggaagctcaaaatcttgttggtcttcatattttatttcggttaaagtg |
1090521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 1077063 - 1076735
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1077063 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctctcgc |
1076964 |
T |
|
| Q |
108 |
ccatccgtagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactc-aatagatttctcatgtgttgtattcaagttgttgcat |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
1076963 |
ccatccatagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactctaagagatttctcatgtgttgtattcaagttgttgcat |
1076864 |
T |
|
| Q |
207 |
gcatgtataccttatacactggtccaaagccaccttctccaagtttgttatagttcgaaaagtgatttgtggcacttatcattgtagaaatattgaagaa |
306 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1076863 |
gcatgtttaccttatatactggtccaaagccaccttctccaagtttattatagtctgaaaagtgatttgtggcacttatcattgtagaaatattgaagaa |
1076764 |
T |
|
| Q |
307 |
aggaagctcaaaatcttgttggtcttcat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1076763 |
aggaagctcaaaatcttgttggtcttcat |
1076735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 1299957 - 1300285
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1299957 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctctcgc |
1300056 |
T |
|
| Q |
108 |
ccatccgtagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactc-aatagatttctcatgtgttgtattcaagttgttgcat |
206 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
1300057 |
ccatccatagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactctaagagatttctcatgtgttgtattcaagttgttgcat |
1300156 |
T |
|
| Q |
207 |
gcatgtataccttatacactggtccaaagccaccttctccaagtttgttatagttcgaaaagtgatttgtggcacttatcattgtagaaatattgaagaa |
306 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1300157 |
gcatgtttaccttatatactggtccaaagccaccttctccaagtttattatagtctgaaaagtgatttgtggcacttatcattgtagaaatattgaagaa |
1300256 |
T |
|
| Q |
307 |
aggaagctcaaaatcttgttggtcttcat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1300257 |
aggaagctcaaaatcttgttggtcttcat |
1300285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 1050146 - 1049799
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgc |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1050146 |
atttcggtgttgaagttttgcacataatataacttcatttttaaattctcttgttccttgtttcgaacttcctgaaagccttttgacggcaatctcttgc |
1050047 |
T |
|
| Q |
108 |
ccatccgtagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactcaatagatttctcatgtgttgtattcaagttgttgcatg |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1050046 |
ccatctgtagctagtgtaccctaaatattatagttggaaaaaattgttagaaaatgagactcaagagatttctcatgtgttgtattcaagttgttgcatg |
1049947 |
T |
|
| Q |
208 |
catgtataccttatacactggtccaaagccaccttctccaagtttgttatagttcgaaaagtgatttgtggcacttatcattgtagaaatattgaagaaa |
307 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1049946 |
catgtttaccttatatactggtccaaagccaccttctccgagtttgttatagttcgaaaagtcatttgtggcacttatcattgttgaaatattgaagaaa |
1049847 |
T |
|
| Q |
308 |
ggaagctcaaaatcttgttggtcttcatattttatttcggttaaagtg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1049846 |
ggaagctcaaaatcttgttggtcttcatctttctcttcggttaaagtg |
1049799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 1107264 - 1106924
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgc |
107 |
Q |
| |
|
|||||| ||||||||||| | |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1107264 |
atttcggtgttgaagtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttgacggcaatctctcgt |
1107165 |
T |
|
| Q |
108 |
ccatccgtagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactcaatagatttctcatgtgttgtattcaagttgttgcatg |
207 |
Q |
| |
|
| || | | |||||||||||||| |||||||| |||||||||||||| ||| ||||||||| | |||||||| | || || |||||| | || |
|
|
| T |
1107164 |
ctgtctagaacaagtgtaccctaaattttatagttagaaaaaattgttagaaaaagagactcaagggttttctcatctattataaccaagttat----tg |
1107069 |
T |
|
| Q |
208 |
catgtataccttatacactggtccaaagccaccttctccaagtttgttatagttcgaaaagtgatttgtggcacttatcattgtagaaatattgaagaaa |
307 |
Q |
| |
|
||||| ||||||||| || |||||||| |||||||||||||| ||||||| || || |||| ||| |||||| || |||||||| | ||||||||| |
|
|
| T |
1107068 |
catgtttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagacagattgaagaat |
1106969 |
T |
|
| Q |
308 |
ggaagctcaaaatcttgttggtcttcatattttatttcggttaaa |
352 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||||| |||| |
|
|
| T |
1106968 |
ggaagctcaaaatcttgttcgtcttcatctttcttttcgggtaaa |
1106924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 13854835 - 13854732
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgc |
107 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||||||| ||| ||||| | ||||||| ||||| | ||||||||||||||| ||||| |||||| |
|
|
| T |
13854835 |
atttcggtgttgaagtttagtacataatataacttcattttaaaactctttaggtccttgtccagaactccttgaaagccttttgacagcaatttcttgc |
13854736 |
T |
|
| Q |
108 |
ccat |
111 |
Q |
| |
|
|||| |
|
|
| T |
13854735 |
ccat |
13854732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 8661 - 8765
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgc |
107 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||||| ||||| ||||| ||||||| ||||| | ||||||||||||||| ||||| ||||| |
|
|
| T |
8661 |
atttcggtgttgaagtttagtacataatataacttcattcttaaactctttaagtccttgtccagaactccttgaaagccttttgacagcaatttcttgt |
8760 |
T |
|
| Q |
108 |
ccatc |
112 |
Q |
| |
|
||||| |
|
|
| T |
8761 |
ccatc |
8765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 28419627 - 28419535
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaat |
100 |
Q |
| |
|
|||||||||||| | ||| | || ||||| |||||||||||||||||||| |||||||| | ||| |||||||||| |||||||| ||||| |
|
|
| T |
28419627 |
atttcgatgttgcaatttaacgcacaatatgacttcatttttaaattctttcgatccttgctcagaatttcctgaaagtcttttgactgcaat |
28419535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 28432858 - 28432754
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgc |
107 |
Q |
| |
|
|||||||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||||| |||||||| |||| ||||| |
|
|
| T |
28432858 |
atttcgatgttgcaatttagcacacaatatgacttcatttttaaattctttcaatccttgacaagaatttcctgaaagtcttttgactgcaacttcttgt |
28432759 |
T |
|
| Q |
108 |
ccatc |
112 |
Q |
| |
|
||||| |
|
|
| T |
28432758 |
ccatc |
28432754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 22689731 - 22689791
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgt |
68 |
Q |
| |
|
|||||||||||| | ||| || || ||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
22689731 |
atttcgatgttgcaatttagcgcacaatatgacttcatttttaaattctattgatccttgt |
22689791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 23555206 - 23555102
Alignment:
| Q |
8 |
atttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgc |
107 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||| | |||||||||| |||||||| | ||| | || ||||| |||||||| || || ||||| |
|
|
| T |
23555206 |
atttcggtgttgaagtttagcacataatattacttcactcttaaattcttccaatccttgtatagaattcccagaaagtcttttgactgctatttcttga |
23555107 |
T |
|
| Q |
108 |
ccatc |
112 |
Q |
| |
|
||||| |
|
|
| T |
23555106 |
ccatc |
23555102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 23285868 - 23285906
Alignment:
| Q |
214 |
taccttatacactggtccaaagccaccttctccaagttt |
252 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
23285868 |
taccttatacactggtccaaatccaccttccccaagttt |
23285906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 23392700 - 23392662
Alignment:
| Q |
214 |
taccttatacactggtccaaagccaccttctccaagttt |
252 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
23392700 |
taccttatacactggtccaaatccaccttccccaagttt |
23392662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 3979634 - 3979676
Alignment:
| Q |
227 |
ggtccaaagccaccttctccaagtttgttatagttcgaaaagt |
269 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||||||||| |
|
|
| T |
3979634 |
ggtccaaaaccaccttctccaagtttgttattgctcgaaaagt |
3979676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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