View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0087-Insertion-15 (Length: 337)
Name: NF0087-Insertion-15
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087-Insertion-15 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 37167342 - 37167011
Alignment:
| Q |
7 |
aagaataacggtaaaagtgaattggagattaccacgagnnnnnnnggtactgttcaacaaaaannnnnnnnatcttgagtatgattctaactcactcaca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
37167342 |
aagaataacggtaaaagtgaattggagattaccacgagttttttcg-tactgttcaacaatttttttttttatcttgagtatgattcttactcactcaca |
37167244 |
T |
|
| Q |
107 |
taccagatctcagtggtacatttcattactgcagtaactatcaatacaccgttcttctctctcgaccagattttgaaccctgcataaatagttaatttaa |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37167243 |
taccagatcccagtggtacatttcattactgcagtaactatcaatacaccgtttttccctctcgaccagattttgaaccctgcataaatagttaatttaa |
37167144 |
T |
|
| Q |
207 |
tacaa-ttagctaggtatataaatatgca--atagccaattgtctaaagccacacacaaccatctaccaattttccatagccacttaacatgaaaacatc |
303 |
Q |
| |
|
||||| |||| | ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37167143 |
tacaagctagcaaagtatataaatatgcaatatatccaa-tgtctaaagccacacacaaccatctaccaattttccatagccaattaacatgaaaacatc |
37167045 |
T |
|
| Q |
304 |
aactactgctattgtgtccctctttattaccctc |
337 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
37167044 |
aactaccactattgtgtccctctttattaccctc |
37167011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1050 times since January 2019
Visitors: 1289