View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0087-Insertion-16 (Length: 231)

Name: NF0087-Insertion-16
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0087-Insertion-16
NF0087-Insertion-16
[»] chr4 (11 HSPs)
chr4 (7-222)||(7885344-7885559)
chr4 (15-126)||(4320580-4320691)
chr4 (15-189)||(4344592-4344766)
chr4 (7-81)||(6753014-6753088)
chr4 (15-126)||(4123900-4124011)
chr4 (15-189)||(4335291-4335465)
chr4 (15-189)||(4361023-4361197)
chr4 (15-81)||(6498487-6498553)
chr4 (7-81)||(6545401-6545475)
chr4 (7-111)||(6761316-6761420)
chr4 (7-101)||(4133378-4133472)
[»] chr7 (3 HSPs)
chr7 (15-222)||(18935299-18935506)
chr7 (15-222)||(34724547-34724754)
chr7 (8-158)||(36213783-36213933)
[»] scaffold0294 (1 HSPs)
scaffold0294 (7-189)||(8853-9035)
[»] chr6 (9 HSPs)
chr6 (7-126)||(5181880-5181999)
chr6 (80-198)||(5066720-5066838)
chr6 (7-186)||(5344810-5344989)
chr6 (80-189)||(5350340-5350449)
chr6 (59-120)||(5383341-5383402)
chr6 (80-189)||(5425856-5425965)
chr6 (8-186)||(5128371-5128549)
chr6 (81-189)||(5096654-5096762)
chr6 (6-126)||(5284341-5284461)
[»] chr5 (1 HSPs)
chr5 (7-126)||(8877618-8877737)
[»] chr3 (4 HSPs)
chr3 (59-120)||(47986857-47986918)
chr3 (59-120)||(47996144-47996205)
chr3 (59-120)||(48005431-48005492)
chr3 (59-120)||(48014716-48014777)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 7885344 - 7885559
Alignment:
Q  7 aatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttata 106  Q
    |||| |||||||||||||| ||||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  7885344 aataaatgcaatgctttttgatcttactactgcaaagggcactcttgtgatagcagtgtcatccgcaaccaaggtggttaaagatttcatttgttctata 7885443  T
Q  107 tcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaagttcacgaagacctgtac 206  Q
    |||||||| ||||| ||||||||||| |||||||||| |||||| ||||| | ||||||||||||||| ||||| ||||||||||| ||||| |||||||    
T  7885444 tcctcttctaacttgtcaatttttgtacatccagacagaatgagtgttttcagcgagtctaacttatatatgctccttggaagttctcgaaggcctgtac 7885543  T
Q  207 aatctttcaagtttat 222  Q
    |||||||||| |||||    
T  7885544 aatctttcaaatttat 7885559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 4320580 - 4320691
Alignment:
Q  15 caatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttc 114  Q
    ||||||||||| | |||||||||| |||||| |||| ||| ||| |||| ||||  |||| || |||||||||||||| ||||||||  |  ||||||||    
T  4320580 caatgctttttgaccttactaatgaaaagggaacttttgttataccagtattatttgcaatcagggtggttaaagattccatttgttccaagtcctcttc 4320679  T
Q  115 caacttttcaat 126  Q
    |||||| |||||    
T  4320680 caacttgtcaat 4320691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 4344766 - 4344592
Alignment:
Q  15 caatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttc 114  Q
    |||||| |||| | ||||||| || |||||| |||| ||| |||||||||||||  |||| ||  ||||||||||||| ||||||||  |  ||||||||    
T  4344766 caatgcgttttgaccttactactgaaaagggtacttttgttatagcagtgttatttgcaatcagagtggttaaagattccatttgttccaagtcctcttc 4344667  T
Q  115 caacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaag 189  Q
    |||||| |||||  ||   |||||||| | |||||||||||| |  || |  ||| |||||||| ||||||||||    
T  4344666 caacttgtcaatcattaaacatccagatagaatgagagttttcagagatttcaacgtatagatgtttcttggaag 4344592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 6753088 - 6753014
Alignment:
Q  7 aatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggt 81  Q
    ||||||| ||||||||||  ||||||||| || ||||||||||| ||| |||||||| |||||||||| ||||||    
T  6753088 aatatatccaatgcttttcaatcttactattgaaaagggcacttttgttatagcagtcttatccgcaatcaaggt 6753014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 4123900 - 4124011
Alignment:
Q  15 caatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttc 114  Q
    ||||||||||| | |||||||  | ||||||||||| ||| |||||||| ||||  |||| ||  ||||||||||||| ||||||||  |  ||||||||    
T  4123900 caatgctttttgaccttactaccgaaaagggcacttttgttatagcagtattatttgcaatcagagtggttaaagattccatttgttccaactcctcttc 4123999  T
Q  115 caacttttcaat 126  Q
    |||||| |||||    
T  4124000 caacttgtcaat 4124011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 4335465 - 4335291
Alignment:
Q  15 caatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttc 114  Q
    ||||||||||| |  |||||| || ||||||||||| ||| ||| |||||||||| || |  |  ||||||||||||| ||||||||  |  ||||||||    
T  4335465 caatgctttttgactttactactgaaaagggcacttttgttataccagtgttatctgccatgagagtggttaaagattccatttgttccaagtcctcttc 4335366  T
Q  115 caacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaag 189  Q
    |||||| ||||| |||   ||||| || | |||||||||||| |  || |  ||| |||||||| ||||||||||    
T  4335365 caacttgtcaatctttaaacatcctgatagaatgagagttttcagagacttcaacgtatagatgtttcttggaag 4335291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 4361197 - 4361023
Alignment:
Q  15 caatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttc 114  Q
    |||||| |||| ||||||| | || |||||| |||| ||| ||| |||||||||  |||| ||  ||||||||||||| ||||||||  |  ||||||||    
T  4361197 caatgcgttttgatcttacaattgaaaagggtacttttgttataccagtgttatttgcaatcagagtggttaaagattccatttgttccaagtcctcttc 4361098  T
Q  115 caacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaag 189  Q
    |||| | |||||  |||  |||||||| | |||||||||||| |  || |  ||| |||||||| ||||||||||    
T  4361097 caacgtgtcaatcattgaacatccagatagaatgagagttttcagagatttcaacgtatagatgtttcttggaag 4361023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 6498487 - 6498553
Alignment:
Q  15 caatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggt 81  Q
    ||||||||||| ||||||||| || |||||| |||| ||| |||||||| |||||||||| ||||||    
T  6498487 caatgctttttgatcttactattgaaaagggaacttttgttatagcagtcttatccgcaatcaaggt 6498553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 6545401 - 6545475
Alignment:
Q  7 aatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggt 81  Q
    ||||||| ||||||||||  |||| |||| || ||||||||||| ||| |||||||| |||||||||| ||||||    
T  6545401 aatatatccaatgcttttcaatctaactattgaaaagggcacttttgttatagcagtcttatccgcaatcaaggt 6545475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 6761420 - 6761316
Alignment:
Q  7 aatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttata 106  Q
    ||||||| |||| |||||  ||||||| | || ||||||||||| ||| |||||||| |||||||||| |||||| || || |||| ||| |||| |||     
T  6761420 aatatatccaatacttttgaatcttacaattgaaaagggcacttttgttatagcagtcttatccgcaatcaaggttgtgaacgattccatctgttctatg 6761321  T
Q  107 tcctc 111  Q
    |||||    
T  6761320 tcctc 6761316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 4133378 - 4133472
Alignment:
Q  7 aatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgtt 101  Q
    ||||||| ||||||||||| | ||| | | || ||||||||||| ||| || |||||||||||| ||| ||  ||||||||||| | ||||||||    
T  4133378 aatatattcaatgctttttgaccttgcgactgaaaagggcacttttgttattgcagtgttatccacaatcagagtggttaaagactccatttgtt 4133472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 18935506 - 18935299
Alignment:
Q  15 caatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttc 114  Q
    ||||||||||| ||||||||| |||||||||||||  ||| | |||||| ||||||||||||| |||||| |||||| |||| |||| ||| ||||||||    
T  18935506 caatgctttttgatcttactactgcaaagggcactcttgttacagcagtcttatccgcaaccagggtggtcaaagatgtcatctgttctatgtcctcttc 18935407  T
Q  115 caacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaagttcacgaagacctgtacaatctttc 214  Q
    |||||| ||||||||||| |||||||| |||||||||| ||| ||||| ||||| ||||||||||||||||||||||||| ||| |||||||| ||||||    
T  18935406 caacttgtcaatttttgtacatccagataaaatgagagctttgaccgactctaatttatagatgcttcttggaagttcacaaaggcctgtacagtctttc 18935307  T
Q  215 aagtttat 222  Q
    || |||||    
T  18935306 aaatttat 18935299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 34724547 - 34724754
Alignment:
Q  15 caatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttc 114  Q
    ||||||||||| ||||||||| |||||| || ||   ||| | || ||| ||||||||||| |   |||| |||||  ||||||||| ||| ||||||||    
T  34724547 caatgctttttgatcttactactgcaaatggaacccttgttacagaagtcttatccgcaactagaatggtcaaagaagtcatttgttctatgtcctcttc 34724646  T
Q  115 caacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaagttcacgaagacctgtacaatctttc 214  Q
    |||||| ||||||||||| |||||||||| |||||||||||| || || |  || |||||||||||||||||||| |||| ||| |||||||| ||||||    
T  34724647 caacttgtcaatttttgtacatccagacacaatgagagtttttactgacttcaatttatagatgcttcttggaagctcacaaaggcctgtacagtctttc 34724746  T
Q  215 aagtttat 222  Q
    || |||||    
T  34724747 aaatttat 34724754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 36213783 - 36213933
Alignment:
Q  8 atatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatat 107  Q
    ||||| || ||||||||  ||||||||| || ||| ||||||  ||| || ||||||||||  |||| ||||||||||||||||| ||| ||||  || |    
T  36213783 atataagcgatgcttttagatcttactactgaaaatggcactcttgttattgcagtgttatttgcaatcaaggtggttaaagattccatctgttccatgt 36213882  T
Q  108 cctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaa 158  Q
    |||||||||| || ||||| ||||  |||||||| | ||||||||||||||    
T  36213883 cctcttccaatttgtcaatctttgaacatccagaaagaatgagagttttaa 36213933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 8853 - 9035
Alignment:
Q  7 aatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttata 106  Q
    ||||||| |||| |||||| | ||||||| || ||||||||||  ||| |  ||||||||||| |||| ||  ||||||||||||| ||| |||| |||     
T  8853 aatatatacaatactttttgaccttactattgaaaagggcactcttgttaatgcagtgttatctgcaagcagagtggttaaagattccatctgttctatg 8952  T
Q  107 tcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaag 189  Q
    |||||||||||||| |||||  || | || ||||| | |||||||||||| |  || |  |||||||||||||||||||||||    
T  8953 tcctcttccaacttgtcaatcattatacacccagaaagaatgagagttttcagagatttcaacttatagatgcttcttggaag 9035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 5181880 - 5181999
Alignment:
Q  7 aatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttata 106  Q
    ||||||||||||||||||  |  |||||| || ||| ||||||  ||| || ||||||||||  |||| ||| ||||||||||||||||||||||  | |    
T  5181880 aatatatgcaatgcttttggactttactactgaaaacggcactcttgttattgcagtgttatttgcaatcaatgtggttaaagatttcatttgttccaaa 5181979  T
Q  107 tcctcttccaacttttcaat 126  Q
    |||||||||||||| |||||    
T  5181980 tcctcttccaacttgtcaat 5181999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 5066720 - 5066838
Alignment:
Q  80 gtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgc 179  Q
    ||||||||||||| |||||||| ||| |||||||| ||||| |||||  || | || ||||| | ||||||||||||||  || |  |||||||||||||    
T  5066720 gtggttaaagattccatttgttctatgtcctcttctaacttgtcaatcattatacacccagaaagaatgagagttttaagagatttcaacttatagatgc 5066819  T
Q  180 ttcttggaagttcacgaag 198  Q
    |||||||||| | ||||||    
T  5066820 ttcttggaaggttacgaag 5066838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 5344989 - 5344810
Alignment:
Q  7 aatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttata 106  Q
    ||||||| ||||||||||| | ||||||| |  |||||| |||| ||| || ||||||||||  || | ||   ||||||||||||||||||||| ||      
T  5344989 aatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcatttgttctaag 5344890  T
Q  107 tcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttcttgg 186  Q
    |||||||||||||| ||||| |||   || || || | |||||||||||| |  || |  ||||||||||||||||||||    
T  5344889 tcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttgg 5344810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 5350449 - 5350340
Alignment:
Q  80 gtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgc 179  Q
    ||||||||||||| |||||||| ||| |||||||||||||| |||||  || | || || || | |||||||||||| |  || |  |||||| ||||||    
T  5350449 gtggttaaagattccatttgttctatgtcctcttccaacttgtcaatcattatacaccctgaaagaatgagagttttgagagatttcaacttaaagatgc 5350350  T
Q  180 ttcttggaag 189  Q
    ||||||||||    
T  5350349 ttcttggaag 5350340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 5383402 - 5383341
Alignment:
Q  59 gcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaactt 120  Q
    ||||||||||| |||| ||| || |||||||||| |||||||| ||| ||||||||||||||    
T  5383402 gcagtgttatctgcaagcaaagtagttaaagattccatttgttctatgtcctcttccaactt 5383341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 5425965 - 5425856
Alignment:
Q  80 gtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgc 179  Q
    ||||||||||||| |||||||| ||| |||||||||||||| |||||  ||   || ||||| | |||||||||||| |  || |  ||||||||||||     
T  5425965 gtggttaaagattccatttgttctatgtcctcttccaacttgtcaatcattacacacccagaaagaatgagagttttcagagatttcaacttatagatgt 5425866  T
Q  180 ttcttggaag 189  Q
    ||||||||||    
T  5425865 ttcttggaag 5425856  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 5128371 - 5128549
Alignment:
Q  8 atatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatat 107  Q
    |||||| ||||||||||| | ||||||| || |||||| |||  | | || ||||||||||  |||| ||  || ||||| |||| ||||||||  |  |    
T  5128371 atatatccaatgctttttgaccttactactgaaaagggtactctttttattgcagtgttatttgcaagcagagttgttaatgattccatttgttccaagt 5128470  T
Q  108 cctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttcttgg 186  Q
    ||||||||||||| |||||  || | || ||||| | |||||||||||| |  || |  ||||||||||||||||||||    
T  5128471 cctcttccaacttgtcaatcattatacaaccagaaagaatgagagttttcaaagatttcaacttatagatgcttcttgg 5128549  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 5096762 - 5096654
Alignment:
Q  81 tggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgct 180  Q
    ||||||| |||| |||||||| ||| |||||||||||||  |||||  || | || ||||| | |||||||||||| |  || |  ||||||||||||||    
T  5096762 tggttaatgattccatttgttctatgtcctcttccaactcgtcaatcattatacacccagaaagaatgagagttttcagagatttcaacttatagatgct 5096663  T
Q  181 tcttggaag 189  Q
    || ||||||    
T  5096662 tcctggaag 5096654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 5284341 - 5284461
Alignment:
Q  6 caatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttat 105  Q
    |||||||| ||||||||||  | ||||||| || ||||||||||  ||| || || |||||||  || | ||  |||||||||||| |||| |||| ||     
T  5284341 caatatatccaatgcttttcgaccttactactgaaaagggcactcttgttattgcggtgttattagctatcagagtggttaaagatgtcatctgttctaa 5284440  T
Q  106 atcctcttccaacttttcaat 126  Q
     |||||||||||||| |||||    
T  5284441 gtcctcttccaacttgtcaat 5284461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 8877737 - 8877618
Alignment:
Q  7 aatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttata 106  Q
    ||||||| ||||||||||| | |||||||||| ||| || |||  | | || ||||||||||  |||| ||  ||||||||||||||||| |||| ||      
T  8877737 aatatatccaatgctttttgaccttactaatgaaaatggtactctttttattgcagtgttatttgcaagcagagtggttaaagatttcatctgttctaag 8877638  T
Q  107 tcctcttccaacttttcaat 126  Q
    ||||| |||||||| |||||    
T  8877637 tcctcctccaacttgtcaat 8877618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 47986857 - 47986918
Alignment:
Q  59 gcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaactt 120  Q
    ||||||||||  |||||||| || |||||||||||||||| ||  || ||||||||||||||    
T  47986857 gcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaactt 47986918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 47996144 - 47996205
Alignment:
Q  59 gcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaactt 120  Q
    ||||||||||  |||||||| || |||||||||||||||| ||  || ||||||||||||||    
T  47996144 gcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaactt 47996205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 48005431 - 48005492
Alignment:
Q  59 gcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaactt 120  Q
    ||||||||||  |||||||| || |||||||||||||||| ||  || ||||||||||||||    
T  48005431 gcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaactt 48005492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 48014716 - 48014777
Alignment:
Q  59 gcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaactt 120  Q
    ||||||||||  |||||||| || |||||||||||||||| ||  || ||||||||||||||    
T  48014716 gcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaactt 48014777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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