View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0087-Insertion-18 (Length: 184)
Name: NF0087-Insertion-18
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087-Insertion-18 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 2624180 - 2624005
Alignment:
| Q |
8 |
agcttcttctgcatttataacactcgttaataaaattcaactaaaaggaaaacataataactaattaaaagaacttacgagcagctaagagaacaaagag |
107 |
Q |
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| T |
2624180 |
agcttcttctgcatttataacactcgttaataaaattcatttaggagagtgaaatatatattaat-agcagaacttacgagcagctaagagaacaaagag |
2624082 |
T |
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| Q |
108 |
gaagaagctcagtccaaggagtgttttcctctccattattatgatgnnnnnnngttcaatgatctttttctccttta |
184 |
Q |
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| T |
2624081 |
gaagaagctcagtccaaggagtgttttcctctccattattatgatatttttttgttcaatgatctttttctccttta |
2624005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 2629940 - 2629867
Alignment:
| Q |
74 |
aaaagaacttacgagcagctaagagaacaaagaggaagaagctcagtccaaggagtgttttcctctccattatt |
147 |
Q |
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| T |
2629940 |
aaaagaacttacgagtagctaagagaacaaagaggaagaagctcagtccaaggagtgtttccctctccattatt |
2629867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 2635948 - 2635881
Alignment:
| Q |
79 |
aacttacgagcagctaagagaacaaagaggaagaagctcagtccaaggagtgttttcctctccattat |
146 |
Q |
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| T |
2635948 |
aacttacgagcatctaagaaaacaataaggaagaaacacatgccaacgagtgttttcctctccattat |
2635881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 2629987 - 2629958
Alignment:
| Q |
43 |
ttcaactaaaaggaaaacataataactaat |
72 |
Q |
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| T |
2629987 |
ttcaactaaaaggaaaacataataactaat |
2629958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 2643459 - 2643423
Alignment:
| Q |
79 |
aacttacgagcagctaagagaacaaagaggaagaagc |
115 |
Q |
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| T |
2643459 |
aacttacgagcagctaagagaacaatgagaaagaagc |
2643423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 2632235 - 2632200
Alignment:
| Q |
80 |
acttacgagcagctaagagaacaaagaggaagaagc |
115 |
Q |
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| T |
2632235 |
acttacgagcagcaatgagaacaaagaggaagaagc |
2632200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 7884641 - 7884605
Alignment:
| Q |
79 |
aacttacgagcagctaagagaacaaagaggaagaagc |
115 |
Q |
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| T |
7884641 |
aacttacgagcagctaagagaacaatgagaaagaagc |
7884605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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