View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0087-Insertion-19 (Length: 164)
Name: NF0087-Insertion-19
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0087-Insertion-19
[» ] chr1 (2 HSPs)
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 5e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 12224348 - 12224504
Alignment:
Q
8
ggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattc
107
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
T
12224348
ggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttgattgggtgccaaaccttcagttcaataatgtagattttctgttagattc
12224447
T
Q
108
taagaaggttgttattcttttaggacatatattgatgatgtctttgagtttagttag
164
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
12224448
taagaaggttgttattcttttaggacatatattgatgatgtctttgagtttagttag
12224504
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 23316356 - 23316277
Alignment:
Q
40
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt
119
Q
|||||||| ||| |||||||||||||| ||| ||| ||||| ||||||||||||||||||| || ||||||||||||||
T
23316356
agtttataaacggaacttgattgggtggtaaatctttagttccataatgtagattttgtgttcgactctaagaaggttgt
23316277
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 38246311 - 38246201
Alignment:
Q
40
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgtt-attcttttaggacatata
138
Q
||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||| |||| ||
T
38246311
agtttatgtacgacacttgattgggtggcaaaccttcagtttgataatgtagactttgtgttagattctaagaaggttgttgattcctttagaacatgta
38246212
T
Q
139
ttgatgatgtc
149
Q
| ||||||||
T
38246211
taaatgatgtc
38246201
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 46210682 - 46210779
Alignment:
Q
67
gcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt-tattcttttaggacatatattgatgatgtctttgagtttagtta
163
Q
||||||||||| ||| ||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||| | |||||||| ||||
T
46210682
gcaaaccttcatttcgataatgttgattttgttttagattctaagaaggttgtcgattattttaggacatatatagatgataacattgagtttggtta
46210779
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 9170325 - 9170215
Alignment:
Q
45
atatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgttattcttttaggacatatattgatg
144
Q
||||| |||| |||||||||||||||| ||| ||| |||||||||||||| ||||||||| ||||| |||| | |||||||| |||| ||| |||
T
9170325
atataagacatttgattgggtggcaaagcttg-gtttgataatgtagattttttgttagattataagattgttg--actcttttagaacatgtatagata
9170229
T
Q
145
atgtctttgagttt
158
Q
||||| ||||||||
T
9170228
atgtcattgagttt
9170215
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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