View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0087-Insertion-19 (Length: 164)
Name: NF0087-Insertion-19
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087-Insertion-19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 5e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 12224348 - 12224504
Alignment:
| Q |
8 |
ggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattc |
107 |
Q |
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| T |
12224348 |
ggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttgattgggtgccaaaccttcagttcaataatgtagattttctgttagattc |
12224447 |
T |
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| Q |
108 |
taagaaggttgttattcttttaggacatatattgatgatgtctttgagtttagttag |
164 |
Q |
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| T |
12224448 |
taagaaggttgttattcttttaggacatatattgatgatgtctttgagtttagttag |
12224504 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 23316356 - 23316277
Alignment:
| Q |
40 |
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt |
119 |
Q |
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| T |
23316356 |
agtttataaacggaacttgattgggtggtaaatctttagttccataatgtagattttgtgttcgactctaagaaggttgt |
23316277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 38246311 - 38246201
Alignment:
| Q |
40 |
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgtt-attcttttaggacatata |
138 |
Q |
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| T |
38246311 |
agtttatgtacgacacttgattgggtggcaaaccttcagtttgataatgtagactttgtgttagattctaagaaggttgttgattcctttagaacatgta |
38246212 |
T |
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| Q |
139 |
ttgatgatgtc |
149 |
Q |
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| T |
38246211 |
taaatgatgtc |
38246201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 46210682 - 46210779
Alignment:
| Q |
67 |
gcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt-tattcttttaggacatatattgatgatgtctttgagtttagtta |
163 |
Q |
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| T |
46210682 |
gcaaaccttcatttcgataatgttgattttgttttagattctaagaaggttgtcgattattttaggacatatatagatgataacattgagtttggtta |
46210779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 9170325 - 9170215
Alignment:
| Q |
45 |
atatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgttattcttttaggacatatattgatg |
144 |
Q |
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| T |
9170325 |
atataagacatttgattgggtggcaaagcttg-gtttgataatgtagattttttgttagattataagattgttg--actcttttagaacatgtatagata |
9170229 |
T |
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| Q |
145 |
atgtctttgagttt |
158 |
Q |
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| T |
9170228 |
atgtcattgagttt |
9170215 |
T |
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