View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0087-Insertion-3 (Length: 689)

Name: NF0087-Insertion-3
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0087-Insertion-3
NF0087-Insertion-3
[»] chr4 (30 HSPs)
chr4 (12-608)||(10782364-10782956)
chr4 (141-457)||(12838984-12839300)
chr4 (141-368)||(5529028-5529256)
chr4 (612-689)||(10782990-10783067)
chr4 (142-606)||(11520173-11520640)
chr4 (498-606)||(9264038-9264145)
chr4 (504-606)||(15049222-15049324)
chr4 (504-606)||(15105100-15105202)
chr4 (488-606)||(1832613-1832730)
chr4 (501-606)||(5529268-5529372)
chr4 (388-573)||(4214627-4214813)
chr4 (516-605)||(12838850-12838939)
chr4 (517-606)||(23082959-23083048)
chr4 (285-397)||(23080601-23080713)
chr4 (488-606)||(23975115-23975229)
chr4 (515-606)||(19547752-19547843)
chr4 (504-606)||(18448112-18448213)
chr4 (539-606)||(9053306-9053373)
chr4 (235-305)||(23972077-23972148)
chr4 (488-605)||(13588139-13588256)
chr4 (537-602)||(11252823-11252888)
chr4 (498-601)||(16730571-16730674)
chr4 (498-577)||(19093566-19093644)
chr4 (431-461)||(22527155-22527185)
chr4 (537-602)||(7583335-7583400)
chr4 (534-606)||(9850465-9850538)
chr4 (629-665)||(9263946-9263982)
chr4 (534-606)||(10087797-10087869)
chr4 (629-665)||(11520081-11520117)
chr4 (534-602)||(15165791-15165859)
[»] scaffold0136 (1 HSPs)
scaffold0136 (137-602)||(14534-15005)
[»] chr3 (28 HSPs)
chr3 (172-606)||(20885790-20886229)
chr3 (105-546)||(27853631-27854080)
chr3 (446-606)||(28369490-28369650)
chr3 (446-606)||(28377308-28377468)
chr3 (446-606)||(28385130-28385290)
chr3 (504-606)||(23055279-23055380)
chr3 (200-352)||(6290467-6290620)
chr3 (141-365)||(820808-821028)
chr3 (141-251)||(22245888-22245998)
chr3 (198-369)||(13907547-13907719)
chr3 (501-606)||(21019041-21019144)
chr3 (611-665)||(13907216-13907270)
chr3 (501-567)||(22246265-22246330)
chr3 (501-605)||(13907307-13907410)
chr3 (534-601)||(23755104-23755171)
chr3 (504-606)||(820548-820649)
chr3 (537-602)||(19575232-19575297)
chr3 (504-592)||(6290769-6290856)
chr3 (534-602)||(23699145-23699213)
chr3 (534-602)||(23717600-23717668)
chr3 (534-602)||(23736056-23736124)
chr3 (141-175)||(16221955-16221989)
chr3 (615-665)||(25779547-25779597)
chr3 (536-577)||(2722903-2722944)
chr3 (515-608)||(26092211-26092304)
chr3 (534-586)||(8448089-8448141)
chr3 (414-458)||(13907457-13907501)
chr3 (505-577)||(22471176-22471247)
[»] chr8 (28 HSPs)
chr8 (54-594)||(5855593-5856140)
chr8 (337-606)||(24519684-24519960)
chr8 (338-461)||(15061482-15061605)
chr8 (210-410)||(30486867-30487060)
chr8 (141-326)||(15064686-15064871)
chr8 (500-606)||(24114922-24115030)
chr8 (502-576)||(14076394-14076468)
chr8 (388-606)||(24905371-24905591)
chr8 (504-606)||(30487144-30487245)
chr8 (542-598)||(24851601-24851657)
chr8 (498-606)||(24381089-24381196)
chr8 (414-461)||(17977463-17977510)
chr8 (542-604)||(15059189-15059251)
chr8 (213-305)||(5052270-5052363)
chr8 (537-606)||(19265099-19265168)
chr8 (612-665)||(24851494-24851547)
chr8 (337-458)||(14076223-14076348)
chr8 (612-664)||(30487283-30487335)
chr8 (612-659)||(27305232-27305279)
chr8 (614-665)||(31015056-31015107)
chr8 (505-578)||(2638007-2638079)
chr8 (141-246)||(17977198-17977303)
chr8 (534-599)||(17977580-17977645)
chr8 (537-602)||(23868533-23868598)
chr8 (612-665)||(24114834-24114887)
chr8 (537-602)||(24722667-24722732)
chr8 (537-602)||(26139175-26139240)
chr8 (537-602)||(29381357-29381422)
[»] chr1 (31 HSPs)
chr1 (141-553)||(26810460-26810868)
chr1 (141-606)||(17442814-17443283)
chr1 (534-606)||(10063690-10063762)
chr1 (505-606)||(27116843-27116943)
chr1 (198-369)||(17837886-17838058)
chr1 (534-606)||(16360836-16360908)
chr1 (534-606)||(22621212-22621284)
chr1 (498-605)||(16786771-16786877)
chr1 (508-606)||(16114062-16114159)
chr1 (505-600)||(14239929-14240024)
chr1 (535-602)||(26612050-26612117)
chr1 (534-606)||(27910212-27910284)
chr1 (613-665)||(27910318-27910370)
chr1 (140-179)||(28008704-28008743)
chr1 (546-577)||(34481954-34481985)
chr1 (141-179)||(17120970-17121008)
chr1 (431-461)||(17838135-17838165)
chr1 (141-179)||(18100474-18100512)
chr1 (141-179)||(25960628-25960666)
chr1 (627-669)||(26581069-26581111)
chr1 (537-602)||(15159514-15159579)
chr1 (537-602)||(18735249-18735314)
chr1 (615-664)||(20033730-20033779)
chr1 (613-662)||(25425766-25425815)
chr1 (537-598)||(26021744-26021805)
chr1 (361-461)||(7220915-7221017)
chr1 (537-601)||(9402626-9402690)
chr1 (534-570)||(15572466-15572502)
chr1 (537-577)||(16112821-16112861)
chr1 (542-602)||(21983730-21983790)
chr1 (505-577)||(33191680-33191751)
[»] scaffold0360 (1 HSPs)
scaffold0360 (283-594)||(17203-17518)
[»] chr5 (34 HSPs)
chr5 (99-606)||(23265674-23266188)
chr5 (141-461)||(26066719-26067040)
chr5 (141-369)||(19762549-19762778)
chr5 (284-449)||(35984638-35984804)
chr5 (501-606)||(19762295-19762399)
chr5 (279-457)||(25579102-25579279)
chr5 (504-606)||(18226969-18227071)
chr5 (488-606)||(26121633-26121750)
chr5 (504-606)||(28254148-28254250)
chr5 (534-606)||(13692936-13693008)
chr5 (428-577)||(26252697-26252849)
chr5 (515-605)||(17831007-17831097)
chr5 (146-303)||(26314273-26314431)
chr5 (279-369)||(18416898-18416988)
chr5 (534-606)||(24188243-24188315)
chr5 (612-665)||(19762205-19762258)
chr5 (505-598)||(22920270-22920363)
chr5 (502-606)||(26308492-26308596)
chr5 (542-606)||(25921236-25921300)
chr5 (498-601)||(17170578-17170679)
chr5 (613-664)||(20103516-20103567)
chr5 (501-606)||(111720-111825)
chr5 (501-606)||(17470297-17470401)
chr5 (544-601)||(19007552-19007609)
chr5 (414-475)||(19081071-19081131)
chr5 (537-602)||(20859687-20859752)
chr5 (612-665)||(23013662-23013715)
chr5 (535-592)||(24261370-24261427)
chr5 (534-606)||(20533183-20533254)
chr5 (506-606)||(22871641-22871739)
chr5 (202-246)||(24164445-24164489)
chr5 (537-577)||(24264494-24264534)
chr5 (537-577)||(24341124-24341164)
chr5 (613-665)||(28279731-28279783)
[»] chr7 (54 HSPs)
chr7 (160-606)||(13708088-13708546)
chr7 (137-606)||(15611708-15612190)
chr7 (144-410)||(5798099-5798361)
chr7 (501-606)||(9863426-9863530)
chr7 (428-606)||(21884296-21884476)
chr7 (385-606)||(9917345-9917570)
chr7 (385-606)||(9925257-9925482)
chr7 (430-606)||(21911616-21911796)
chr7 (198-461)||(5530723-5530987)
chr7 (498-606)||(6040025-6040132)
chr7 (279-461)||(1882987-1883170)
chr7 (501-606)||(5221710-5221814)
chr7 (211-606)||(10938274-10938672)
chr7 (414-606)||(22468192-22468387)
chr7 (198-369)||(10649927-10650098)
chr7 (502-606)||(10650249-10650352)
chr7 (501-606)||(18467622-18467725)
chr7 (502-564)||(4901089-4901151)
chr7 (501-606)||(9501273-9501377)
chr7 (534-606)||(10991642-10991714)
chr7 (542-606)||(18448938-18449002)
chr7 (517-606)||(5484939-5485028)
chr7 (501-606)||(21502167-21502271)
chr7 (613-665)||(2454792-2454844)
chr7 (505-577)||(8310520-8310591)
chr7 (612-668)||(9863333-9863389)
chr7 (534-606)||(9891162-9891234)
chr7 (539-606)||(9288261-9288328)
chr7 (539-606)||(9298053-9298120)
chr7 (488-605)||(9721872-9721989)
chr7 (612-665)||(5221620-5221673)
chr7 (616-665)||(5485069-5485118)
chr7 (627-668)||(8158442-8158483)
chr7 (414-459)||(9501182-9501227)
chr7 (612-665)||(9501414-9501467)
chr7 (505-601)||(6006976-6007071)
chr7 (630-665)||(8038503-8038538)
chr7 (412-458)||(1874166-1874212)
chr7 (536-606)||(8038380-8038450)
chr7 (515-577)||(9612613-9612675)
chr7 (515-577)||(9840184-9840246)
chr7 (534-599)||(3586218-3586283)
chr7 (537-602)||(4449995-4450060)
chr7 (612-665)||(4900958-4901011)
chr7 (428-461)||(9863574-9863607)
chr7 (141-246)||(11218691-11218796)
chr7 (537-602)||(11804057-11804122)
chr7 (510-606)||(24751918-24752015)
chr7 (505-577)||(1588499-1588570)
chr7 (505-577)||(3735601-3735671)
chr7 (534-602)||(9134125-9134193)
chr7 (534-606)||(19394274-19394346)
chr7 (542-602)||(23297692-23297752)
chr7 (542-602)||(39272164-39272224)
[»] scaffold0019 (2 HSPs)
scaffold0019 (183-602)||(27124-27530)
scaffold0019 (198-302)||(183831-183936)
[»] chr2 (31 HSPs)
chr2 (99-461)||(25939679-25940043)
chr2 (184-606)||(27420001-27420428)
chr2 (184-461)||(27418855-27419135)
chr2 (213-408)||(24533987-24534181)
chr2 (84-606)||(26291602-26292141)
chr2 (337-606)||(8502173-8502445)
chr2 (517-606)||(26652360-26652449)
chr2 (501-606)||(41789763-41789867)
chr2 (504-606)||(17181239-17181340)
chr2 (542-606)||(20175180-20175244)
chr2 (141-267)||(25348591-25348718)
chr2 (141-246)||(45553720-45553825)
chr2 (501-606)||(45620946-45621050)
chr2 (538-606)||(27419214-27419282)
chr2 (542-604)||(17891007-17891070)
chr2 (537-602)||(27908167-27908232)
chr2 (515-604)||(30682896-30682985)
chr2 (390-462)||(41789894-41789967)
chr2 (200-268)||(41789974-41790043)
chr2 (534-606)||(34368684-34368756)
chr2 (534-577)||(32439383-32439426)
chr2 (570-608)||(31427148-31427186)
chr2 (209-383)||(45621180-45621358)
chr2 (211-303)||(8502478-8502571)
chr2 (505-577)||(23010807-23010878)
chr2 (534-603)||(27870617-27870686)
chr2 (616-668)||(12556737-12556789)
chr2 (542-606)||(12556828-12556892)
chr2 (498-562)||(18552540-18552603)
chr2 (612-664)||(22623114-22623166)
chr2 (534-606)||(25937926-25937997)
[»] chr6 (24 HSPs)
chr6 (426-606)||(3357385-3357567)
chr6 (137-606)||(9726593-9727061)
chr6 (428-606)||(32759265-32759445)
chr6 (501-606)||(10504481-10504586)
chr6 (501-606)||(14726452-14726556)
chr6 (515-606)||(9386971-9387062)
chr6 (516-606)||(34479439-34479529)
chr6 (534-606)||(2587642-2587714)
chr6 (612-669)||(10821648-10821705)
chr6 (414-461)||(23644970-23645017)
chr6 (534-602)||(17822751-17822818)
chr6 (537-601)||(21846420-21846484)
chr6 (414-461)||(14726289-14726336)
chr6 (534-577)||(21687898-21687941)
chr6 (226-374)||(14726087-14726234)
chr6 (501-549)||(9291227-9291274)
chr6 (414-462)||(9291317-9291365)
chr6 (198-246)||(9291479-9291527)
chr6 (433-473)||(10504410-10504449)
chr6 (537-605)||(14722973-14723041)
chr6 (534-602)||(15613309-15613377)
chr6 (542-602)||(27123548-27123608)
chr6 (629-665)||(30355698-30355734)
chr6 (612-668)||(34479564-34479620)
[»] scaffold0672 (1 HSPs)
scaffold0672 (141-372)||(4462-4694)
[»] scaffold0394 (1 HSPs)
scaffold0394 (504-600)||(10776-10872)
[»] scaffold0086 (1 HSPs)
scaffold0086 (498-606)||(8697-8804)
[»] scaffold0085 (2 HSPs)
scaffold0085 (516-606)||(23333-23423)
scaffold0085 (612-665)||(23458-23511)
[»] scaffold0653 (1 HSPs)
scaffold0653 (539-577)||(16-54)
[»] scaffold0056 (2 HSPs)
scaffold0056 (539-602)||(22308-22371)
scaffold0056 (537-602)||(53816-53881)
[»] scaffold0128 (1 HSPs)
scaffold0128 (141-179)||(63-101)
[»] scaffold0043 (1 HSPs)
scaffold0043 (137-178)||(89321-89362)
[»] scaffold1156 (1 HSPs)
scaffold1156 (542-606)||(589-653)
[»] scaffold0024 (1 HSPs)
scaffold0024 (505-577)||(40584-40655)


Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 12 - 608
Target Start/End: Original strand, 10782364 - 10782956
Alignment:
Q  12 attaatgtaaaaatattttaacatattgtaaattaaccattgtcctaaattgccaacattgtaatctcgatcttcctcaaggtcctttcatctatgaata 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  10782364 attaatgtaaagatattttaacatattgtaaattaaccattgtcctaaattgccaacattgtaatctcgatcttcctaaaggtccttccatctatgaata 10782463  T
Q  112 ttaaaagcatatatcatactctctttcgatagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagct 211  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||| ||||| ||||||||||||||||||||||||||||||    
T  10782464 ttagaagcatatatcatactctctttcgatagttctacaaacgagcagctttatcaatgtctatcttatcgaggtgaaagaagagcggagttactgagct 10782563  T
Q  212 gatttaagtcatggagtcacctgttttcttaattattaatagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcac 311  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  10782564 gatttaagtcatgaagtcacctgttttcttaattactaatagttgcttccagattttagcagatatgcatcaatattaggtatgccacctccttgagcac 10782663  T
Q  312 ttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggta---atgtcac 408  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||    
T  10782664 ttactttcagggttcgctcgcattcggcttgtttccccggtaactaattaattacttcatgataagacaaatttagatcaatattaggtaaatatgtcac 10782763  T
Q  409 cttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactagtagcataaagataattaaacaatgactttaa 508  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||| ||   |||||||||||||||||||||||||||    ||||||| ||||||||    
T  10782764 cttcataagtgcctaagttagggttatacttccgtggagacaaatctcac---acaatagtaaaactagtagcataaaga----taaacaacgactttaa 10782856  T
Q  509 attaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaata 608  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  10782857 attaaataaattatctaacaatcagaatagaggttcatcttagaaccctagcctaaaaatatttagttaatcatagtaactaaagaaaaattacaaaata 10782956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 141 - 457
Target Start/End: Complemental strand, 12839300 - 12838984
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||||||||||| ||| |||||| || ||||||||||   | ||||||||| |  |||||||||  |   ||||||  |||  |||||||||||| ||    
T  12839300 tagttctacaaacgggcatccctataagcgtctaccttaccaatgtgaaagaataatggagttactaggaaaatttaaaacataaagtcacctgtttcct 12839201  T
Q  241 taattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggc 339  Q
    |||||| ||| |||||||| |  ||||  | || || | ||||||||||||||||| ||||||||| || ||||||| ||||||| ||||||| |||||     
T  12839200 taattactaactagttactacatgattacaacagatgttcatcaatattaggtatgtcacctccctaagtacttactatcagggtacgctcgctttcggt 12839101  T
Q  340 ttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgctt 439  Q
    ||||||| ||||| |||||||||||||||| |||| ||| | ||  ||||||||||||||| |||||| || | ||||||||||| |||||||||| |||    
T  12839100 ttgtttcgctagttactaattaattacttcctgattagagagatagacatcaatattaggt-atgtcatctccgtaagtgcctaatttagggttatactt 12839002  T
Q  440 cagaggagacaaatctta 457  Q
    ||||||||||||||||||    
T  12839001 cagaggagacaaatctta 12838984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 141 - 368
Target Start/End: Original strand, 5529028 - 5529256
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||| ||||||| | ||||||||||| || |||||||   |||||||||||||  ||| ||||||   |||||||||||||| |||| ||||||| ||    
T  5529028 tagttcaacaaacgggtagccctattagcgtttaccttaccaaggtgaaagaagaatggaattactggattgatttaagtcatgaagtcgcctgtttact 5529127  T
Q  241 taattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggc 339  Q
    |||||  ||| |||||||||||  || | |||| |||||||||||||||||||||| || |||| | || ||||||||||||||| |  |||| |||||     
T  5529128 taattgctaactagttacttcctaatctcagcatatatgcatcaatattaggtatgtcatctccttaagaacttactttcagggtaccatcgctttcggt 5529227  T
Q  340 ttgtttccctagtaactaattaattactt 368  Q
    ||||||| || || || ||||||||||||    
T  5529228 ttgtttcactggttaccaattaattactt 5529256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 612 - 689
Target Start/End: Original strand, 10782990 - 10783067
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttcattccgattgtcaccacttgtgcg 689  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  10782990 agagagactcctcctttgaagctcctagtgctttccttcctcttgaaccacttcattccgattgtcaccacttatgcg 10783067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 142 - 606
Target Start/End: Complemental strand, 11520640 - 11520173
Alignment:
Q  142 agttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttctt 241  Q
    |||||||||||||| || |||||| || ||||||||||   ||||| |||||||  |||||||||| ||||||| ||||| |  |||||  ||||| |||    
T  11520640 agttctacaaacgaacaaccctatcagcgtctaccttagaaaggtgcaagaagaatggagttactgggctgattgaagtcgttaagtcaattgtttcctt 11520541  T
Q  242 aattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggct 340  Q
    ||||| ||| || ||||| ||  |||| | || || | |||||||||||| |||| ||||||| | || ||||||| |  |||| | ||||| ||||| |    
T  11520540 aattactaactacttactacctaatttcaacatatttacatcaatattagttatgtcacctcc-taagaacttactatt-gggtacactcgctttcggtt 11520443  T
Q  341 tgtttccctagtaactaattaattacttcatgataagacaaatttacat--caatattaggtaatgtcaccttcataagtgcctaagttagggttatgct 438  Q
     ||||| ||||| | |||||||||||||| |  | ||||| || || ||  |||||||||| |||||||| | | ||||||||||||| |||||||||||    
T  11520442 cgtttcactagttaataattaattacttcctagttagacagatataaatatcaatattaggcaatgtcac-tacctaagtgcctaagtcagggttatgct 11520344  T
Q  439 tcagaggagacaaatcttacgca--acaatagtaaaactag-tagcataaagataat----taaacaatgactttaaattaaataaattatctaacaatc 531  Q
     |||||||||||| | |||||||  ||||||   ||||||  ||||| | ||| |||    |||  ||  ||| |||||||||||| ||||| |||||      
T  11520343 ccagaggagacaagttttacgcattacaata---aaactaaatagcaaacagaaaataacttaataaacaactataaattaaataa-ttatccaacaaat 11520248  T
Q  532 agaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    | ||| ||| ||||||||||||||||||| ||||||  |||| ||| |||| ||| |||||||||||||||||||    
T  11520247 aaaatcgaggttcatcttagaaccctagcataaaaaggtttaattattcatggtaactaaagacaaattacaaaa 11520173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 498 - 606
Target Start/End: Complemental strand, 9264145 - 9264038
Alignment:
Q  498 aatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaa 597  Q
    ||||||| |||||||||||| ||||| |||||  | |||| || |||||||||||||||||||||| ||||||||||||| |||| ||| ||||||||||    
T  9264145 aatgactataaattaaataa-ttatccaacaaatataataaagtttcatcttagaaccctagcctataaatatttagttactcatggtaactaaagacaa 9264047  T
Q  598 attacaaaa 606  Q
    |||||||||    
T  9264046 attacaaaa 9264038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 504 - 606
Target Start/End: Complemental strand, 15049324 - 15049222
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattaca 603  Q
    ||||||||||||||| |||| ||||| || ||||||| ||||||||||||||||| || ||||| ||||||||| |||| ||| ||||||| ||||||||    
T  15049324 tttaaattaaataaaatatccaacaaacaaaatagaggttcatcttagaaccctatccaaaaaagatttagttactcatggtaactaaagataaattaca 15049225  T
Q  604 aaa 606  Q
    |||    
T  15049224 aaa 15049222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 504 - 606
Target Start/End: Original strand, 15105100 - 15105202
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattaca 603  Q
    ||||||||||||||| |||| ||||| || ||||||| ||||||||||||||||| || ||||| ||||||||| |||| ||| ||||||| ||||||||    
T  15105100 tttaaattaaataaaatatccaacaaacaaaatagaggttcatcttagaaccctatccaaaaaagatttagttactcatggtaactaaagataaattaca 15105199  T
Q  604 aaa 606  Q
    |||    
T  15105200 aaa 15105202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 488 - 606
Target Start/End: Complemental strand, 1832730 - 1832613
Alignment:
Q  488 ataattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtat 587  Q
    |||||| || || |||||||||||||||| || ||| ||||| || || |||| ||| |||||||||||||||||||||| | ||||||| |||| |||     
T  1832730 ataattgaataaagactttaaattaaatacat-atccaacaaacaaaaaagaggttcgtcttagaaccctagcctaaaaagagttagttattcatggtaa 1832632  T
Q  588 ctaaagacaaattacaaaa 606  Q
    |||||||||||||||||||    
T  1832631 ctaaagacaaattacaaaa 1832613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 501 - 606
Target Start/End: Original strand, 5529268 - 5529372
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||| |||||||| |||||||| |||||  | ||||||| ||||||||||||||||| |||||||| ||||||||| |||| ||| |||||||||||||    
T  5529268 gacttcaaattaaa-aaattatccaacaaaaaaaatagagtttcatcttagaaccctaacctaaaaagatttagttactcatggtaactaaagacaaatt 5529366  T
Q  601 acaaaa 606  Q
    | ||||    
T  5529367 aaaaaa 5529372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 388 - 573
Target Start/End: Complemental strand, 4214813 - 4214627
Alignment:
Q  388 atcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactag-tagc----a 482  Q
    ||||||||||||| |||||||  || ||||||||||| | ||||||||||| || || ||||||||||||||||  | |||| ||||||  ||||    |    
T  4214813 atcaatattaggtcatgtcactatc-taagtgcctaaatcagggttatgctccaaagaagacaaatcttacgcatga-tagttaaactaaatagcgaaca 4214716  T
Q  483 taaagataattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatattta 573  Q
    |||| |||| | || || ||||||||||||||||||| ||| |||||  | ||||||| ||||| |||||||||||||||||||| |||||    
T  4214715 taaa-ataactgaataaagactttaaattaaataaat-atccaacaaataaaatagaggttcattttagaaccctagcctaaaaagattta 4214627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 516 - 605
Target Start/End: Complemental strand, 12838939 - 12838850
Alignment:
Q  516 aaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaa 605  Q
    |||||||| ||||| |  ||||||  |||||||||||| ||||||||||||| ||||||| | |||| ||| ||||||||||||||||||    
T  12838939 aaattatccaacaaaccaaatagaagttcatcttagaatcctagcctaaaaagatttagtgactcatggtaactaaagacaaattacaaa 12838850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 517 - 606
Target Start/End: Original strand, 23082959 - 23083048
Alignment:
Q  517 aattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| ||||| || ||||||| || |||||||||||| |||||||||| ||||||||  |||| ||| ||||| |||||||||||||    
T  23082959 aattatccaacaaacaaaatagaggttaatcttagaacccaagcctaaaaagatttagtttctcatggtaactaaaaacaaattacaaaa 23083048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 285 - 397
Target Start/End: Original strand, 23080601 - 23080713
Alignment:
Q  285 tattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaatt 384  Q
    |||||||||||  |||| ||| || ||||||| ||||||| | ||||| ||||| ||||||  ||||| |||||||| ||| ||| |||| ||||||||     
T  23080601 tattaggtatgttaccttcctaagtacttactatcagggtacactcgctttcgggttgtttagctagttactaattacttagttcctgattagacaaata 23080700  T
Q  385 tacatcaatatta 397  Q
    |||||||||||||    
T  23080701 tacatcaatatta 23080713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 488 - 606
Target Start/End: Original strand, 23975115 - 23975229
Alignment:
Q  488 ataattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtat 587  Q
    |||| |||| || ||||||||||||||||||| ||| |||||  ||||||||| |||   ||||||||||||| |||||| |||||||||  ||| | |     
T  23975115 ataactaaataaagactttaaattaaataaat-atccaacaaatagaatagaggttc---ttagaaccctagcttaaaaagatttagttacacatggcaa 23975210  T
Q  588 ctaaagacaaattacaaaa 606  Q
    |||||||||||||||||||    
T  23975211 ctaaagacaaattacaaaa 23975229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 606
Target Start/End: Complemental strand, 19547843 - 19547752
Alignment:
Q  515 taaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||| |||||||||  | ||||||  |||||||||||||| |||||||||||   ||||||| |||| ||| |||||||||||||||||||    
T  19547843 taaataatctaacaaataaaatagatgttcatcttagaaccttagcctaaaaaggattagttactcatggtaactaaagacaaattacaaaa 19547752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 606
Target Start/End: Complemental strand, 18448213 - 18448112
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattaca 603  Q
    |||||||||||| ||| ||| ||||| || |||| || ||| ||||||||||||| |||||||| ||||| ||| |||| ||| |||||||||||| |||    
T  18448213 tttaaattaaattaat-atccaacaaacataataaaggttcttcttagaaccctatcctaaaaagatttaattactcatggtaactaaagacaaataaca 18448115  T
Q  604 aaa 606  Q
    |||    
T  18448114 aaa 18448112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 539 - 606
Target Start/End: Original strand, 9053306 - 9053373
Alignment:
Q  539 agattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||||||||||| || ||||||||||||| ||||||||| | || ||| ||||||| |||||||||||    
T  9053306 agattcatcttaaaatcctagcctaaaaagatttagttattaatggtaactaaagataaattacaaaa 9053373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 23972077 - 23972148
Alignment:
Q  235 ttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccct 305  Q
    |||||||||||| ||| ||||||||||| |||||| |||  |||||| |||||||||||||| |||||||||    
T  23972077 ttttcttaattactaactagttacttcctgattttggcaggtatgcaccaatattaggtatgtcacctccct 23972148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 605
Target Start/End: Original strand, 13588139 - 13588256
Alignment:
Q  488 ataattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccc-tagcctaaaaatatttagttaatcatagta 586  Q
    |||| |||| || |||||||||||||| ||||  || |||||  | ||||||| |  |||||||||||| ||||||||||||||||||||| |||| |||    
T  13588139 ataactaaataaagactttaaattaaaaaaatattc-aacaaatataatagaggtatatcttagaacccctagcctaaaaatatttagttactcatggta 13588237  T
Q  587 tctaaagacaaattacaaa 605  Q
     ||||||| ||| ||||||    
T  13588238 actaaagataaagtacaaa 13588256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 11252888 - 11252823
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| ||||||||||||||||||  ||| ||| ||||| |||||||||    
T  11252888 agaggttcatcttagaactctaacctaaaaatatttagttacacatggtaactaaaaacaaattac 11252823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 601
Target Start/End: Original strand, 16730571 - 16730674
Alignment:
Q  498 aatgactttaaattaaataaattatctaacaatca-gaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagaca 596  Q
    |||||| |||||||||||||| |||| |||||  |  ||||||| ||||||||||||| ||| |||||||||| |||||||  ||| ||| ||||| |||    
T  16730571 aatgacgttaaattaaataaa-tatccaacaaaaataaatagaggttcatcttagaactctaacctaaaaataattagttacacatggtaactaaaaaca 16730669  T
Q  597 aatta 601  Q
    |||||    
T  16730670 aatta 16730674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 577
Target Start/End: Original strand, 19093566 - 19093644
Alignment:
Q  498 aatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    |||||| ||||||||||||| ||||| |||||    ||||||| ||||||||||||||||| |||| |||||| ||||||    
T  19093566 aatgacattaaattaaataa-ttatccaacaaaataaatagaggttcatcttagaaccctaacctataaatatctagtta 19093644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 461
Target Start/End: Original strand, 22527155 - 22527185
Alignment:
Q  431 gttatgcttcagaggagacaaatcttacgca 461  Q
    |||||||||||||||||||||||||||||||    
T  22527155 gttatgcttcagaggagacaaatcttacgca 22527185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 7583335 - 7583400
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  7583335 agaggttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 7583400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 606
Target Start/End: Complemental strand, 9850538 - 9850465
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaa-gacaaattacaaaa 606  Q
    ||||||| |||||||||||||| || ||||| || ||||||||| |||| ||| ||||| ||| ||||||||||    
T  9850538 aatagaggttcatcttagaaccataacctaacaagatttagttactcatggtaactaaacgactaattacaaaa 9850465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 629 - 665
Target Start/End: Complemental strand, 9263982 - 9263946
Alignment:
Q  629 gaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  9263982 gaagctcctagtgtttgccttcctcttgaaccacttc 9263946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 10087797 - 10087869
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| ||||||||| || |||| ||||| |  ||||||||| | || ||| |||||||||||||||||||    
T  10087797 aatagaggttcatcttataatcctaccctaataggatttagttacttatggtaactaaagacaaattacaaaa 10087869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 629 - 665
Target Start/End: Complemental strand, 11520117 - 11520081
Alignment:
Q  629 gaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  11520117 gaagctcctagtgtttaccttcctcttgaaccacttc 11520081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 602
Target Start/End: Original strand, 15165791 - 15165859
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||||||||||||| ||| ||| |||||||| ||||| |||  ||| ||| ||||| |||||||||    
T  15165791 aatagagattcatcttataactctaacctaaaaagatttaattatacattgtaactaaaaacaaattac 15165859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 137 - 602
Target Start/End: Complemental strand, 15005 - 14534
Alignment:
Q  137 tcgatagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgtt 236  Q
    |||||||||||||||||   || |||||| ||  |||||||||  ||||||||||||||||| ||||||   ||||||||| ||  || |||||| ||||    
T  15005 tcgatagttctacaaacagtcatccctatcagcatctaccttaccgaggtgaaagaagagcgaagttacatggctgatttaggttgtgaagtcacatgtt 14906  T
Q  237 ttcttaattattaa--tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcat 334  Q
    | |||||||| | |  |||| | |||| |||||||||| |||||||||||||||||||||| ||||||| | || |||||||||||||||| |||||| |    
T  14905 tccttaattactcaactagtgaattcctgattttagcatatatgcatcaatattaggtatgtcacctccataagtacttactttcagggtttgctcgctt 14806  T
Q  335 tcggcttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtcaccttcataagtgcctaagttagggtta 434  Q
    ||||| | |||||||||| |||||||||||||||| |||| | |||||| |||||||||||||||||||||||| | | ||||||||||||| |||||||    
T  14805 tcggcatctttccctagttactaattaattacttcctgattaaacaaatatacatcaatattaggtaatgtcacatccctaagtgcctaagtcagggtta 14706  T
Q  435 tgcttcagaggagacaaatcttacgcaacaatagtaaaactagtagcataa----agataattaaacaatgactttaaattaaataaattatctaacaat 530  Q
    ||||||||| ||||||||||||||| ||||| |||||||||| || |||||    | |||| |||| || ||| ||||||||||||||||||  |||||     
T  14705 tgcttcagaagagacaaatcttacgtaacaacagtaaaactaataacataataataaataaataaataaagaccttaaattaaataaattattcaacaac 14606  T
Q  531 cagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||| |||| ||||| ||||||||||||| |||||| ||||||||| |||| ||| |||||||||||||||    
T  14605 cagaacagaggttcatattagaaccctagcttaaaaagatttagttactcatggtaactaaagacaaattac 14534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 7e-94; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 172 - 606
Target Start/End: Original strand, 20885790 - 20886229
Alignment:
Q  172 ctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaatagttacttccagattttagc 271  Q
    ||||||||  ||||||||| ||||| |||||||||| |||||||| |||| || |||||| ||||| ||||||||||| |||||||||||   ||   |     
T  20885790 ctaccttaccgaggtgaaaaaagagtggagttactgggctgatttcagtcgtgaagtcacttgtttccttaattattactagttacttcctttttcagga 20885889  T
Q  272 acatatgcatcaatattaggtatgccacctccctgagcac-ttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttca 370  Q
    | |||||||||||||||||||||| ||||||||| |  || ||||| ||| |||  |||||| ||   ||| ||||| |||| |||||||||||||||      
T  20885890 aaatatgcatcaatattaggtatgtcacctccctaaataccttactctcaaggtcagctcgctttaaacttctttccatagttactaattaattactttc 20885989  T
Q  371 tgataagacaaatttacatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagta 470  Q
    |||| ||||||| |||||||||||||||| |||| ||||| | ||| ||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||    
T  20885990 tgattagacaaagttacatcaatattaggcaatgacacctccctaaatgcctaagtcagggttatgcttcggaggagacaaatcttacacaacaacagta 20886089  T
Q  471 aaactagtagcataaagataattaa----acaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaa 566  Q
    ||||||||| || |||||||| |||    | || ||||||||| ||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||    
T  20886090 aaactagtaacaaaaagataaataactaaataaagactttaaaataaataaattatctaacaaccagaataaaggttcatcttagaaccttagcctaaaa 20886189  T
Q  567 atatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||||||| |||| ||| |||||||||||||||||||    
T  20886190 atatttagttactcatggtaactaaagacaaattacaaaa 20886229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 105 - 546
Target Start/End: Complemental strand, 27854080 - 27853631
Alignment:
Q  105 atgaatattaaaagcatatatcatactctctt-tcgatagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagtt 203  Q
    |||||| ||| ||||| ||| || |||||| | |||||||||||||||||||| ||||||||||| |||||||||||  |||||||||| ||| ||||||    
T  27854080 atgaatcttagaagcacataacacactctcctctcgatagttctacaaacgagaagccctattagcgtctaccttatcaaggtgaaagatgagtggagtt 27853981  T
Q  204 actgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctc 302  Q
    |||  ||||||||||||| || ||| |||||||| || ||||| ||| ||||||||||  |||| | | | |||| ||||||||||||||||||||||||    
T  27853980 actaggctgatttaagtcgtgaagtaacctgtttcctaaattactaactagttacttcgtgattctggaagatatacatcaatattaggtatgccacctc 27853881  T
Q  303 cctgagca-cttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggta 401  Q
    |||  | | ||||||   |||||| |||| | || ||||| | ||| | || ||||||||||||||||||||| | ||| || ||||||||||||| |||    
T  27853880 cctaggtaccttactcatagggtttgctctcttttggcttctatccatggttactaattaattacttcatgattaaacatatatacatcaatattaagta 27853781  T
Q  402 atgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaact-agtagcataa----agataattaaa 496  Q
     | |||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| | | ||||| ||    | |||| ||||    
T  27853780 gtctcacctccctaagtgcctaagtcagagttatgcttcagaggagacaaatcttacgcaacaacagtaaaattaaatagcacaaaaataaataactaaa 27853681  T
Q  497 caatgactttaaattaaataaattatctaacaatcagaatagagattcat 546  Q
     || |||||||||| |||||||||||| ||||| |||||||||| |||||    
T  27853680 taaagactttaaatcaaataaattatccaacaaccagaatagaggttcat 27853631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 446 - 606
Target Start/End: Complemental strand, 28369650 - 28369490
Alignment:
Q  446 agacaaatcttacgcaacaatagtaaaactagtagcataaagataattaa-----acaatgactttaaattaaataaattatctaacaatcagaatagag 540  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||     | || ||||||| ||     |||||||| ||||| ||||||||||    
T  28369650 agacaaatcttacgcaacaacagtaaaactagtagcataaagataaataactaaaataaagactttacat-----aaattatccaacaaccagaatagag 28369556  T
Q  541 attcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
     || |||||||||||| |||||||||| |||||||||  ||| ||| ||||||| |||||| ||||    
T  28369555 gttaatcttagaacccaagcctaaaaagatttagttacccatggtaactaaagagaaattataaaa 28369490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 446 - 606
Target Start/End: Complemental strand, 28377468 - 28377308
Alignment:
Q  446 agacaaatcttacgcaacaatagtaaaactagtagcataaagataattaa-----acaatgactttaaattaaataaattatctaacaatcagaatagag 540  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||     | || ||||||| ||     |||||||| ||||| ||||||||||    
T  28377468 agacaaatcttacgcaacaacagtaaaactagtagcataaagataaataactaaaataaagactttacat-----aaattatccaacaaccagaatagag 28377374  T
Q  541 attcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
     || |||||||||||| |||||||||| |||||||||  ||| ||| ||||||| |||||| ||||    
T  28377373 gttaatcttagaacccaagcctaaaaagatttagttacccatggtaactaaagagaaattataaaa 28377308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 446 - 606
Target Start/End: Complemental strand, 28385290 - 28385130
Alignment:
Q  446 agacaaatcttacgcaacaatagtaaaactagtagcataaagataattaa-----acaatgactttaaattaaataaattatctaacaatcagaatagag 540  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||     | || ||||||| ||     |||||||| ||||| ||||||||||    
T  28385290 agacaaatcttacgcaacaacagtaaaactagtagcataaagataaataactaaaataaagactttacat-----aaattatccaacaaccagaatagag 28385196  T
Q  541 attcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
     || |||||||||||| |||||||||| |||||||||  ||| ||| ||||||| |||||| ||||    
T  28385195 gttaatcttagaacccaagcctaaaaagatttagttacccatggtaactaaagagaaattataaaa 28385130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 504 - 606
Target Start/End: Complemental strand, 23055380 - 23055279
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattaca 603  Q
    |||||||||||||||| ||| ||||| |||||||||  ||||||||| |||||||||||||||| | ||||||| |||| ||| ||||||||||||||||    
T  23055380 tttaaattaaataaat-atccaacaaacagaatagaagttcatcttacaaccctagcctaaaaagacttagttactcatggtaactaaagacaaattaca 23055282  T
Q  604 aaa 606  Q
    |||    
T  23055281 aaa 23055279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 200 - 352
Target Start/End: Original strand, 6290467 - 6290620
Alignment:
Q  200 agttactgagctgatttaagtcatggagtcacctgttttcttaatta-ttaatagttacttccagattttagcacatatgcatcaatattaggtatgcca 298  Q
    ||||| || |||||||||||||||| |||||| || || |||||||| ||| || ||||| || ||||| |||  || | ||||||||||||||||| ||    
T  6290467 agttattgtgctgatttaagtcatgaagtcacttggttccttaattacttactaattactacctgatttcagctgatgttcatcaatattaggtatgtca 6290566  T
Q  299 cctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagt 352  Q
    ||||||| |  ||||||| ||||||| ||||||| ||||| ||||||| |||||    
T  6290567 cctccctaaatacttactatcagggtacgctcgctttcggtttgtttcgctagt 6290620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 365
Target Start/End: Complemental strand, 821028 - 820808
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||||||||||| | ||| |||| || ||||||||||   | ||| |||||||  |||||||||| ||||||||||||  || |||||| ||||| ||    
T  821028 tagttctacaaacgggaagctctatcagcgtctaccttacgaatgtgcaagaagaatggagttactgggctgatttaagttgtgaagtcacttgtttcct 820929  T
Q  241 taattattaatagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggct 340  Q
    ||   |||| ||| |||| || ||||| |||| || | ||||||||||||||||| ||||| ||| || ||||||  ||||||| |||| || ||||| |    
T  820928 ta---attactagctactacctgatttcagcaaatgttcatcaatattaggtatgtcaccttcctaagtacttac-atcagggtacgcttgctttcggtt 820833  T
Q  341 tgtttccctagtaactaattaatta 365  Q
    |||||  ||| | ||||||||||||    
T  820832 tgttttactacttactaattaatta 820808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 141 - 251
Target Start/End: Original strand, 22245888 - 22245998
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||||||||||| | |||||||| ||||||||||| |   |||||| || |||  |||||||||||||||||||||||| || |||||  ||||| ||    
T  22245888 tagttctacaaacgggtagccctatcagtgtctacctcaccaaggtgagaggagaatggagttactgagctgatttaagtcgtgaagtcaattgtttcct 22245987  T
Q  241 taattattaat 251  Q
    |||||| ||||    
T  22245988 taattactaat 22245998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 369
Target Start/End: Complemental strand, 13907719 - 13907547
Alignment:
Q  198 ggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgc 296  Q
    |||||||||  | ||||||||||| || |||||| ||||| |||||||| ||| ||||||||  || |||| |||| || | |||||||||||||||||     
T  13907719 ggagttactaggttgatttaagtcgtgaagtcacttgtttccttaattactaactagttactatcatatttcagcagattttcatcaatattaggtatgt 13907620  T
Q  297 cacctccctgagcacttactttcagggttcgctcgc-attcggcttgtttccctagtaactaattaattacttc 369  Q
    ||||| ||| || ||||||| ||||||| |||| ||  || || ||||||| ||||| ||||| ||||||||||    
T  13907619 cacct-cctaagtacttactatcagggtacgcttgctttttggtttgtttcgctagttactaactaattacttc 13907547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 606
Target Start/End: Complemental strand, 21019144 - 21019041
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||||||||||||||  ||||| ||||| ||||||| || ||||||||| |||||||| || |||| ||||||||| |||| ||| | |||||||||||    
T  21019144 gactttaaattaaatag-ttatccaacaaacagaataaag-ttcatcttaaaaccctagtctcaaaagatttagttactcatggtaaccaaagacaaatt 21019047  T
Q  601 acaaaa 606  Q
    ||||||    
T  21019046 acaaaa 21019041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 611 - 665
Target Start/End: Complemental strand, 13907270 - 13907216
Alignment:
Q  611 tagagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    |||||||||| |||| ||||||||||||||| || ||||||||||||||||||||    
T  13907270 tagagagactacttccttgaagctcctagtgcttgccttcctcttgaaccgcttc 13907216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 567
Target Start/End: Original strand, 22246265 - 22246330
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaa 567  Q
    ||||||||||||||||| ||||| |||||  | ||||||| ||||||||||||||||||||||||||    
T  22246265 gactttaaattaaataa-ttatccaacaaataaaatagaggttcatcttagaaccctagcctaaaaa 22246330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 605
Target Start/End: Complemental strand, 13907410 - 13907307
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||||||||||||||| ||||| || || |||||||||| | |||| |||||||||| | |||||| |||||||||  ||| ||| ||||  |||||||    
T  13907410 gactttaaattaaataa-ttatccaataaacagaatagaggtccatcctagaaccctatcttaaaaagatttagttacccatggtaactaagaacaaatt 13907312  T
Q  601 acaaa 605  Q
    |||||    
T  13907311 acaaa 13907307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 601
Target Start/End: Complemental strand, 23755171 - 23755104
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatta 601  Q
    ||||||| |||||||||||||| || ||||||||||||||||||  ||| ||| ||||| ||||||||    
T  23755171 aatagaggttcatcttagaaccataacctaaaaatatttagttacacatggtaactaaaaacaaatta 23755104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 504 - 606
Target Start/End: Complemental strand, 820649 - 820548
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattaca 603  Q
    |||||||||||||| ||||| ||||| || ||| ||| ||||| ||||||||||||||| | || |||||||||  ||| ||| | ||| ||||||||||    
T  820649 tttaaattaaataa-ttatccaacaaacaaaattgaggttcatgttagaaccctagcctgagaagatttagttacccatggtaaccaaacacaaattaca 820551  T
Q  604 aaa 606  Q
    |||    
T  820550 aaa 820548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 19575297 - 19575232
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||||||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  19575297 agagattcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 19575232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 592
Target Start/End: Original strand, 6290769 - 6290856
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaa 592  Q
    |||||||||||||| ||||| ||||| || || | || || ||||||||||||||||||||| | ||||||||| |||| ||| |||||    
T  6290769 tttaaattaaataa-ttatccaacaaacataaaataggttaatcttagaaccctagcctaaagagatttagttactcatggtaactaaa 6290856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 602
Target Start/End: Complemental strand, 23699213 - 23699145
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||| |||||||||||||| || |||||||||||||| |||  ||| ||| ||||| |||||||||    
T  23699213 aatagaggttcatcttagaaccataacctaaaaatatttaattacacatggtaactaaaaacaaattac 23699145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 602
Target Start/End: Complemental strand, 23717668 - 23717600
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||| |||||||||||||| || |||||||||||||| |||  ||| ||| ||||| |||||||||    
T  23717668 aatagaggttcatcttagaaccataacctaaaaatatttaattacacatggtaactaaaaacaaattac 23717600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 602
Target Start/End: Complemental strand, 23736124 - 23736056
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||| |||||||||||||| || |||||||||||||| |||  ||| ||| ||||| |||||||||    
T  23736124 aatagaggttcatcttagaaccataacctaaaaatatttaattacacatggtaactaaaaacaaattac 23736056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 16221955 - 16221989
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctac 175  Q
    ||||||||||||||||||||||||| |||||||||    
T  16221955 tagttctacaaacgagcagccctatcagtgtctac 16221989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 665
Target Start/End: Complemental strand, 25779597 - 25779547
Alignment:
Q  615 gagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||||||||| || ||| ||||||||  ||||||||||||||||||||||    
T  25779597 gagactccttccttaaagttcctagtgccttccttcctcttgaaccgcttc 25779547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 2722944 - 2722903
Alignment:
Q  536 tagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||| |||||||||||||||||||||| |||||| ||||||    
T  2722944 tagaggttcatcttagaaccctagcctataaatatctagtta 2722903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 608
Target Start/End: Original strand, 26092211 - 26092304
Alignment:
Q  515 taaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaata 608  Q
    ||||| ||| ||||| || ||||||| ||||||||||||||||| ||||| ||  |||| ||| |||| |||  |||| | |||||||||||||    
T  26092211 taaataatccaacaaacaaaatagaggttcatcttagaaccctaccctaataaggtttatttactcatggtaattaaatataaattacaaaata 26092304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 8448089 - 8448141
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagta 586  Q
    ||||||| |||| | ||||||||||||||| ||||||||||||| || |||||    
T  8448089 aatagaggttcaacgtagaaccctagcctataaatatttagttactcctagta 8448141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 13907501 - 13907457
Alignment:
Q  414 taagtgcctaagttagggttatgcttcagaggagacaaatcttac 458  Q
    ||||||||||| | | ||||||| |||||||||||||||||||||    
T  13907501 taagtgcctaaatcatggttatgtttcagaggagacaaatcttac 13907457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 505 - 577
Target Start/End: Complemental strand, 22471247 - 22471176
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||||||||||| ||||| |||||  | |||| || ||||||||||||| || ||||||||| |||||||||    
T  22471247 ttaaattaaataa-ttatccaacaaataaaataaaggttcatcttagaactcttgcctaaaaagatttagtta 22471176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 4e-80; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 54 - 594
Target Start/End: Original strand, 5855593 - 5856140
Alignment:
Q  54 tcctaaattgccaacattgtaatctcgatcttcctcaaggtcctttcatctatgaatattaaaagcatatatcatactctc--tttcgatagttctacaa 151  Q
    ||||||||| ||| || |||| || |||||||| | |||||||   ||| ||||||| ||| ||||| ||| || ||||||  | ||  |||||||||||    
T  5855593 tcctaaatttccatcagtgtagtcccgatcttcataaaggtccgaccatttatgaatcttagaagcacataacacactctccctctcagtagttctacaa 5855692  T
Q  152 acgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa- 250  Q
    ||| ||| || ||  || ||| ||||||  |||||||||||| ||||||||||||| ||| |||||||||    |||||| ||||| |||||||| |||     
T  5855693 acgggcaaccttaccagcgtccaccttaccgaggtgaaagaaaagcggagttactgggctaatttaagtcgcaaagtcacttgtttccttaattactaaa 5855792  T
Q  251 tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggcttgtttcccta 350  Q
    |||||| |||| |||||||  | ||||  |||||||||||||||| |||||| ||  | |||||||||||||||| |||||  |||||| | ||||||||    
T  5855793 tagttaattcctgattttaatagatataaatcaatattaggtatgtcacctctctatgtacttactttcagggtttgctcgttttcggcatttttcccta 5855892  T
Q  351 gtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagaca 450  Q
    || ||||||||||||||| ||||| ||||| || | ||||| |||||||||||||||| | | |||||||||||||  |||||||||||||||||| |||    
T  5855893 gttactaattaattactttatgattagacagatattcatcattattaggtaatgtcacttccctaagtgcctaagtctgggttatgcttcagaggataca 5855992  T
Q  451 aatcttacgcaacaatagtaaaactagtagcataa----agataattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcat 546  Q
    |||| || ||||||  |||||||||||||||||||      ||||||||| || || |||||||||||| || |||| |||| ||||| ||||| |||||    
T  5855993 aatcctatgcaacatcagtaaaactagtagcataataattaataattaaataaagaatttaaattaaattaaatatccaacactcagagtagaggttcat 5856092  T
Q  547 cttagaaccctagcctaaaaatatttagttaatcatagtatctaaaga 594  Q
    |||||||  |||||||||||| || |||||| |||| ||| |||||||    
T  5856093 cttagaaatctagcctaaaaagatgtagttactcatggtaactaaaga 5856140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 337 - 606
Target Start/End: Complemental strand, 24519960 - 24519684
Alignment:
Q  337 ggcttgtttccctagtaactaattaattacttcatgat-aagacaaatttacat--caatattaggtaatgtcaccttcataagtgcctaagtt--aggg 431  Q
    |||||||||||||||| |||||||| ||||||| |||| |||||| || || ||  ||| |||||||| |||||||||| |||||||||| ||   ||||    
T  24519960 ggcttgtttccctagtcactaattagttacttcctgattaagacatatataaatatcaaaattaggta-tgtcaccttcctaagtgcctaggtatcaggg 24519862  T
Q  432 ttatgcttcagaggagacaaatcttacgcaacaatagtaaaactag-tagcataaagataattaaacaat---gactttaaattaaataaattatctaac 527  Q
    ||||  |||| |||||| |||||||||||| | ||||||||| ||  ||||||||| | ||| |   |||   |||||||||||||||| |||||| |||    
T  24519861 ttataattcaaaggagataaatcttacgca-cgatagtaaaattaaatagcataaataaaataaccgaatatagactttaaattaaatacattatccaac 24519763  T
Q  528 aatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    || || ||||||| ||||||||| |||||||||||||||| ||||||||   ||| ||| ||||||||||| |||||||    
T  24519762 aaccaaaatagaggttcatcttaaaaccctagcctaaaaagatttagttgcacatggtaactaaagacaaactacaaaa 24519684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 338 - 461
Target Start/End: Complemental strand, 15061605 - 15061482
Alignment:
Q  338 gcttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgc 437  Q
    ||||||||||||||| |  |||||||||||| ||||| |||||||  ||||||||||||||||||| ||||||   |||||| |||||| |||||||||     
T  15061605 gcttgtttccctagttataaattaattactttatgattagacaaacatacatcaatattaggtaatatcacctcgctaagtgtctaagtcagggttatgt 15061506  T
Q  438 ttcagaggagacaaatcttacgca 461  Q
    |||| |||||||||||||||||||    
T  15061505 ttcaaaggagacaaatcttacgca 15061482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 210 - 410
Target Start/End: Original strand, 30486867 - 30487060
Alignment:
Q  210 ctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgag 308  Q
    ||||||||||||||| |||||| |||||||||||||| ||| |||||||| || ||||| |||| ||||| ||||||||||||||       ||| | ||    
T  30486867 ctgatttaagtcatgaagtcacgtgttttcttaattactaattagttactacctgatttcagcagatatgaatcaatattaggta-------tccataag 30486959  T
Q  309 cacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtcac 408  Q
     ||||||| ||||||| ||||||| ||||| || |||  ||||| |||||||||||||||||| || ||||| |  |||||||||||||||| |||||||    
T  30486960 tacttactatcagggtacgctcgctttcggtttattttgctagttactaattaattacttcattattagacatacatacatcaatattaggt-atgtcac 30487058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 141 - 326
Target Start/End: Complemental strand, 15064871 - 15064686
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||||||||||  |||||| ||| || ||||||||||    ||||||||||||| |||| | ||  |||||| |||||| || |||| ||||||||||    
T  15064871 tagttctacaaacaggcagccttatcagcgtctaccttaccatggtgaaagaagagtggagatgctaggctgatctaagtcgtgaagtcgcctgttttct 15064772  T
Q  241 taattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttc 326  Q
     | ||| ||| ||||||||||  |||||| ||| |||| ||||||||||||||||| |||||| || || ||||||||| |||||||    
T  15064771 ca-ttactaactagttacttcttgatttttgcagatatacatcaatattaggtatgtcacctcactaagtacttacttttagggttc 15064686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 500 - 606
Target Start/End: Complemental strand, 24115030 - 24114922
Alignment:
Q  500 tgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcc--taaaaatatttagttaatcatagtatctaaagacaa 597  Q
    |||||||||||| |||||| |||| |||||  ||||||||| ||  ||||||||||||||||  |||||||||||||||| ||||  || ||||||||||    
T  24115030 tgactttaaattgaataaaatatccaacaactagaatagaggtttttcttagaaccctagcccctaaaaatatttagttactcatgataactaaagacaa 24114931  T
Q  598 attacaaaa 606  Q
    |||||||||    
T  24114930 attacaaaa 24114922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 576
Target Start/End: Original strand, 14076394 - 14076468
Alignment:
Q  502 actttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtt 576  Q
    ||||| |||||||||||||||| ||||| ||||||| || || |||||||||||||||| |||||| ||||||||    
T  14076394 actttcaattaaataaattatccaacaaccagaatataggttaatcttagaaccctagcgtaaaaagatttagtt 14076468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 606
Target Start/End: Original strand, 24905371 - 24905591
Alignment:
Q  388 atcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactag-tagcataaa 486  Q
    ||||||||||||  ||||||| | | ||||||||||| | ||| |||||||||||| ||||||||||||||||| | ||||||||||||  ||| | | |    
T  24905371 atcaatattaggccatgtcac-tacctaagtgcctaaatcaggtttatgcttcagaagagacaaatcttacgca-ctatagtaaaactaaatagtaaata 24905468  T
Q  487 gataattaaacaat----gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcat 582  Q
    || ||| |   |||    ||| |||||| |||||  ||||| ||||| |||||||||| ||||||||||||||||||| |||||| |||||||||  |||    
T  24905469 gaaaataactgaataaaggacattaaatcaaatag-ttatccaacaaacagaatagaggttcatcttagaaccctagcataaaaagatttagttacccat 24905567  T
Q  583 agtatctaaagacaaattacaaaa 606  Q
      || ||||| |||| ||||||||    
T  24905568 gataactaaaaacaagttacaaaa 24905591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 606
Target Start/End: Original strand, 30487144 - 30487245
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattaca 603  Q
    ||| |||||||||| ||||| ||||| || ||||||| || ||||||||||| || |||||||| ||||||||| ||||  || ||||||||||||||||    
T  30487144 ttttaattaaataa-ttatccaacaaacaaaatagaggtttatcttagaaccataacctaaaaagatttagttactcatcataactaaagacaaattaca 30487242  T
Q  604 aaa 606  Q
    |||    
T  30487243 aaa 30487245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 542 - 598
Target Start/End: Original strand, 24851601 - 24851657
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaa 598  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||    
T  24851601 ttcatcttagaaccctagcctaaaaaaatttagttactcatggtaactaaagacaaa 24851657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 606
Target Start/End: Complemental strand, 24381196 - 24381089
Alignment:
Q  498 aatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaa 597  Q
    |||||||||||||||||||| ||||| |||||  | |||||||||| || |||| |||||||| |||||| ||||| || | ||| | | ||||| ||||    
T  24381196 aatgactttaaattaaataa-ttatccaacaaataaaatagagatttattttaggaccctagcataaaaagatttatttgaacatggcaactaaaaacaa 24381098  T
Q  598 attacaaaa 606  Q
    |||||||||    
T  24381097 attacaaaa 24381089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 461
Target Start/End: Original strand, 17977463 - 17977510
Alignment:
Q  414 taagtgcctaagttagggttatgcttcagaggagacaaatcttacgca 461  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||    
T  17977463 taagtgcctaaatcacggttatgcttcagaggagacaaatcttacgca 17977510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 604
Target Start/End: Complemental strand, 15059251 - 15059189
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaa 604  Q
    |||||||||||||  ||||||||||| || |||||| |||| ||| |||||||||||||||||    
T  15059251 ttcatcttagaactgtagcctaaaaagatctagttactcatggtaactaaagacaaattacaa 15059189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 5052363 - 5052270
Alignment:
Q  213 atttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccct 305  Q
    |||||||||||| |||||| ||||| ||||||||  || |||||||| ||  ||||||| | || | ||||||||||||||||| |||||||||    
T  5052363 atttaagtcatgaagtcacttgtttccttaattaccaactagttactacctaattttagtagatgttcatcaatattaggtatgtcacctccct 5052270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 606
Target Start/End: Original strand, 19265099 - 19265168
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||||||    
T  19265099 agaggttcatcttagaacgctaacctaaaaagatttagttacacatggtaactaaaaacaaattacaaaa 19265168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 665
Target Start/End: Complemental strand, 24851547 - 24851494
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||| ||||| || |||||||| ||||||||| ||||||||||||||||||||    
T  24851547 agagaaactccctccttgaagcttctagtgtttgccttcctcttgaaccgcttc 24851494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 458
Target Start/End: Original strand, 14076223 - 14076348
Alignment:
Q  337 ggcttgtttccctagtaactaattaattacttcatgat-aagacaaatttacat--caatattaggtaatgtcaccttcataagtgcctaagtt--aggg 431  Q
    |||| ||||||||||| |||||||| ||||||| |||| ||||||||| || ||  || |||||||||  ||||||| | |||||||||| ||   ||||    
T  14076223 ggctcgtttccctagttactaattagttacttcctgattaagacaaatataaatatcagtattaggtac-gtcacctccctaagtgcctaggtatcaggg 14076321  T
Q  432 ttatgcttcagaggagacaaatcttac 458  Q
    |||| ||||| ||||||||||||||||    
T  14076322 ttatacttcaaaggagacaaatcttac 14076348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 612 - 664
Target Start/End: Original strand, 30487283 - 30487335
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgctt 664  Q
    ||||| |||||| | |||||||| ||||||||| |||||||||||||||||||    
T  30487283 agagaaactcctcccttgaagctactagtgtttgccttcctcttgaaccgctt 30487335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 659
Target Start/End: Original strand, 27305232 - 27305279
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaac 659  Q
    |||||||||| ||| |||||| ||||||||||| ||||||||||||||    
T  27305232 agagagactcattccttgaagatcctagtgtttgccttcctcttgaac 27305279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 665
Target Start/End: Original strand, 31015056 - 31015107
Alignment:
Q  614 agagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||||||||  ||||| |||||||| |||| ||||||||||||||||||||    
T  31015056 agagactcctcatttgatgctcctagcgtttgccttcctcttgaaccgcttc 31015107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 578
Target Start/End: Original strand, 2638007 - 2638079
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaa 578  Q
    ||||||||||||| ||||| |||||    ||||||| |||||||||||| ||||||||| |||||| |||||||    
T  2638007 ttaaattaaataa-ttatccaacaaaacaaatagaggttcatcttagaaacctagcctataaatatctagttaa 2638079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 17977198 - 17977303
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    ||||| |||||||| | |||||||| || |||| |||||   ||||| ||| |||  |||||||||  ||||||||||||| || |||||| |||||||     
T  17977198 tagttttacaaacgggaagccctatcagcgtctgccttaccaaggtgcaaggagaatggagttactaggctgatttaagtcgtgaagtcacttgttttca 17977297  T
Q  241 taatta 246  Q
    ||||||    
T  17977298 taatta 17977303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 599
Target Start/End: Original strand, 17977580 - 17977645
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaat 599  Q
    ||||||| || |||||||||| ||||| |||||| |||||||||  ||| ||| ||||||||||||    
T  17977580 aatagaggtttatcttagaactctagcttaaaaagatttagttacacatggtaactaaagacaaat 17977645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 23868598 - 23868533
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  23868598 agaggttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 23868533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 612 - 665
Target Start/End: Complemental strand, 24114887 - 24114834
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||| |||||| | | ||||||||||||| || ||||||||||||||||||||    
T  24114887 agagaaactcctccctagaagctcctagtggttgccttcctcttgaaccgcttc 24114834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 24722732 - 24722667
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  24722732 agaggttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 24722667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 26139175 - 26139240
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| ||||||||||||||||||   || ||| ||||| |||||||||    
T  26139175 agaggttcatcttagaactctaacctaaaaatatttagttacaaatggtaactaaaaacaaattac 26139240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 29381422 - 29381357
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  29381422 agaggttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 29381357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 141 - 553
Target Start/End: Original strand, 26810460 - 26810868
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||||||||||| |||| | ||| | |||||||||||  | ||||||| |||||||||||||||  | |||||||||||||| || ||| ||||||||    
T  26810460 tagttctacaaacgggcagtcttatcaatgtctaccttaccgtggtgaaaaaagagcggagttactaggttgatttaagtcatgaaggcacatgttttct 26810559  T
Q  241 taattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggc 339  Q
    |||||| ||  || ||||||||  ||||||  | |||| ||||||||||||||||| ||||||  | || ||||||||||||||||| ||||| ||| ||    
T  26810560 taattactacctaattacttcctaattttactagatatacatcaatattaggtatgtcacctctataagtacttactttcagggttcactcgctttcagc 26810659  T
Q  340 ttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgctt 439  Q
    ||||||| ||||| || ||||||||||||| | || ||||| || ||||||||||||| || ||||||||        | ||||||||||| |||| |||    
T  26810660 ttgtttctctagttaccaattaattacttcctaattagacagatatacatcaatattatgt-atgtcacc--------tccctaagttaggattattctt 26810750  T
Q  440 cagaggagacaaatcttacgcaacaatagtaaaactagtagcataaag----ataattaaacaatgactttaaattaaataaattatctaacaatcagaa 535  Q
    ||||||||| |||||||| ||||||| | |||||| |||| |||||||    ||||||||| || ||||||||| ||||||||||||| ||||| || ||    
T  26810751 cagaggagataaatcttaagcaacaacaataaaaccagtaacataaagataaataattaaataaagactttaaaataaataaattatccaacaaccataa 26810850  T
Q  536 tagagattcatcttagaa 553  Q
    ||||| ||||| ||||||    
T  26810851 tagaggttcatgttagaa 26810868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 141 - 606
Target Start/End: Original strand, 17442814 - 17443283
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||||||||||| | | |||||| || ||||||||||   |||| |||||| | |  |||||||| ||| ||||||||| || |||||||||||||||    
T  17442814 tagttctacaaacgggaaaccctatcagcgtctaccttaccaaggtaaaagaaaaacaaagttactgggcttatttaagtcctgaagtcacctgttttct 17442913  T
Q  241 taattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggc 339  Q
    |||||| ||| ||||||||  | ||||| |||| || | | ||||||||||||||| ||| || || || ||||||| ||||||| ||||||| ||| |     
T  17442914 taattactaactagttactatctgatttcagcagatgttcgtcaatattaggtatgtcacatctctaagtacttactatcagggtacgctcgctttcaga 17443013  T
Q  340 ttgtttccctagtaactaattaattacttcatgataagacaaattt--acatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgc 437  Q
    ||||||  ||||| |||| ||||| |||||  | | ||||| || |  | |||||||||| |  |||||| || | ||||||  ||| | ||||||||||    
T  17443014 ttgttttgctagttactagttaataacttccaggttagacatatataaatatcaatatta-gccatgtca-ctacctaagtgtttaaatcagggttatgc 17443111  T
Q  438 ttcagaggagacaaatcttacgcaacaatagtaaaact-agtagc--at-aaagataa-ttaaacaatgactttaaattaaataaattatctaacaatca 532  Q
    |||| |||||||||||||||||| || ||||||||||| | ||||  || ||| |||| | ||  || ||||||||||||||| ||||||| ||||| ||    
T  17443112 ttcaaaggagacaaatcttacgc-actatagtaaaactaaatagcgaataaaaaataactgaataaaagactttaaattaaat-aattatccaacaaaca 17443209  T
Q  533 gaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
     ||||||| |||||||||||||||| ||||||||| |||||||||  ||| ||  |||||||||||||||||||    
T  17443210 aaatagaggttcatcttagaaccctggcctaaaaagatttagttacccatggtgactaaagacaaattacaaaa 17443283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 534 - 606
Target Start/End: Complemental strand, 10063762 - 10063690
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||    
T  10063762 aatagaggttcatcttagaaccctagcctaaaaagatttagttattcatggtaactaaagacaaattacaaaa 10063690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 505 - 606
Target Start/End: Complemental strand, 27116943 - 27116843
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaa 604  Q
    ||||||||||||| |||||||||||    ||||||| ||||||||||||||||||| ||||||||||||||||  ||| ||| ||||||||||||| |||    
T  27116943 ttaaattaaataa-ttatctaacaaaataaatagaggttcatcttagaaccctagcttaaaaatatttagttacacatggtaactaaagacaaatttcaa 27116845  T
Q  605 aa 606  Q
    ||    
T  27116844 aa 27116843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 198 - 369
Target Start/End: Original strand, 17837886 - 17838058
Alignment:
Q  198 ggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgc 296  Q
    |||||||||| | ||||||||||| || |||||| ||||| |||||||| ||| |||||||| ||  |||| |||| || | |||||||||| ||||||     
T  17837886 ggagttactgggatgatttaagtcgtgaagtcacttgtttccttaattactaactagttactacctaatttcagcatatgttcatcaatattcggtatgt 17837985  T
Q  297 cacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttc 369  Q
    || ||| || || ||||||| ||||||| ||||||| ||||| ||||||| | ||| | ||| ||||||||||    
T  17837986 catctctctaagtacttactatcagggtacgctcgctttcggtttgtttcgcaagttattaactaattacttc 17838058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 16360836 - 16360908
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||  ||| ||| ||||||||||| |||||||    
T  16360836 aatagaggttcatcttagaaccctagcctataaatatctagttacacatggtaactaaagacaaaatacaaaa 16360908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 22621212 - 22621284
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||  ||| |||  ||||||||||||||||||    
T  22621212 aatagaggttcattttagaaccctagcctaaaaagatttagttacacatggtaaataaagacaaattacaaaa 22621284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 498 - 605
Target Start/End: Complemental strand, 16786877 - 16786771
Alignment:
Q  498 aatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaa 597  Q
    |||||| ||||||||||||| |||||||||||  | |||| || |||||| ||||||||||| ||||| ||||||||||| |||| ||| ||||| || |    
T  16786877 aatgacattaaattaaataa-ttatctaacaaataaaataaaggttcatcgtagaaccctaggctaaatatatttagttactcatggtaactaaaaacga 16786779  T
Q  598 attacaaa 605  Q
    || |||||    
T  16786778 atcacaaa 16786771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 606
Target Start/End: Original strand, 16114062 - 16114159
Alignment:
Q  508 aattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||||||||| ||||| |||||  | ||||||| |||||||||||| |||| |||||||| |||||||||  ||| ||| ||||| |||||||||||||    
T  16114062 aattaaataa-ttatccaacaaataaaatagaggttcatcttagaaacctaacctaaaaagatttagttatccatggtaactaaaaacaaattacaaaa 16114159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 505 - 600
Target Start/End: Complemental strand, 14240024 - 14239929
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    |||||| |||| || |||| ||||| || |||| || ||| |||||||||||||||||||||| |||||||||  ||| | | |||||||||||||    
T  14240024 ttaaataaaattaaatatccaacaaacataatacaggttcctcttagaaccctagcctaaaaagatttagttagacatggaaactaaagacaaatt 14239929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 602
Target Start/End: Complemental strand, 26612117 - 26612050
Alignment:
Q  535 atagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||||| ||||||||||||| ||| |||||||| |||||||||| ||| ||| ||||| |||||||||    
T  26612117 atagaggttcatcttagaactctatcctaaaaagatttagttaaacatggtaactaaaaacaaattac 26612050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 27910212 - 27910284
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| ||||||||| ||||||| ||||| |   |||||||| |||| ||| |||||||||||||||||||    
T  27910212 aatagaggttcatcttacaaccctaccctaatatggtttagttactcatggtaactaaagacaaattacaaaa 27910284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 665
Target Start/End: Original strand, 27910318 - 27910370
Alignment:
Q  613 gagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||||||||| | |||||||||| ||||||| ||||||||||||||| ||||    
T  27910318 gagagactcctcccttgaagctccaagtgtttgccttcctcttgaaccacttc 27910370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 28008704 - 28008743
Alignment:
Q  140 atagttctacaaacgagcagccctattagtgtctacctta 179  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  28008704 atagttctacaaacgggcagccctatcagtgtctacctta 28008743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 577
Target Start/End: Original strand, 34481954 - 34481985
Alignment:
Q  546 tcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||||||||||||||||||||||||||||||    
T  34481954 tcttagaaccctagcctaaaaatatttagtta 34481985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 17121008 - 17120970
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctacctta 179  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  17121008 tagttctacaaacgagcacccctattagtgtctgcctta 17120970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 461
Target Start/End: Original strand, 17838135 - 17838165
Alignment:
Q  431 gttatgcttcagaggagacaaatcttacgca 461  Q
    |||||||||||||||||||||||||||||||    
T  17838135 gttatgcttcagaggagacaaatcttacgca 17838165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 18100512 - 18100474
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctacctta 179  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  18100512 tagttctacaaacaagcagccctatcagtgtctacctta 18100474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 25960666 - 25960628
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctacctta 179  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  25960666 tagttctacaaactagcagccctatcagtgtctacctta 25960628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 627 - 669
Target Start/End: Original strand, 26581069 - 26581111
Alignment:
Q  627 ttgaagctcctagtgttttccttcctcttgaaccgcttcattc 669  Q
    ||||||||||||||| || ||||||||||||||||||| ||||    
T  26581069 ttgaagctcctagtgcttgccttcctcttgaaccgctttattc 26581111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 15159579 - 15159514
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||  ||| ||||||||||||||||||  ||| ||| ||||| |||||||||    
T  15159579 agaggttcatcttagaaatctaacctaaaaatatttagttacacatggtaactaaaaacaaattac 15159514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 18735314 - 18735249
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  18735314 agaggttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 18735249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 664
Target Start/End: Complemental strand, 20033779 - 20033730
Alignment:
Q  615 gagactccttctttgaagctcctagtgttttccttcctcttgaaccgctt 664  Q
    ||||||||| | |||||||||||| || || |||||||||||||||||||    
T  20033779 gagactcctcccttgaagctcctaatggttgccttcctcttgaaccgctt 20033730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Original strand, 25425766 - 25425815
Alignment:
Q  613 gagagactccttctttgaagctcctagtgttttccttcctcttgaaccgc 662  Q
    ||||||||||||| |||| |||||||| | || |||||||||||||||||    
T  25425766 gagagactccttcattgacgctcctagcgcttgccttcctcttgaaccgc 25425815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 598
Target Start/End: Original strand, 26021744 - 26021805
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaa 598  Q
    |||| |||||||||||||| || ||||| ||||||||||||  ||| ||| |||||||||||    
T  26021744 agaggttcatcttagaaccataacctaataatatttagttacacatggtaactaaagacaaa 26021805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 361 - 461
Target Start/End: Original strand, 7220915 - 7221017
Alignment:
Q  361 aattacttcatgat-aagacaaatttacatcaatattaggtaatgtcaccttcataagtgcct--aagttagggttatgcttcagaggagacaaatctta 457  Q
    |||||||||||||| |||||| || | || ||||||||||||  ||||||| | |||||||||  |  | ||||||||| |||||||||||||||||||     
T  7220915 aattacttcatgattaagacagatattcaccaatattaggtac-gtcacctccctaagtgcctttatatcagggttatgtttcagaggagacaaatcttg 7221013  T
Q  458 cgca 461  Q
    ||||    
T  7221014 cgca 7221017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 537 - 601
Target Start/End: Original strand, 9402626 - 9402690
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatta 601  Q
    |||||||||||||||||| ||| ||||||||||  ||||||  ||| ||| ||||| ||||||||    
T  9402626 agagattcatcttagaactctaacctaaaaataagtagttacacatggtaactaaaaacaaatta 9402690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 570
Target Start/End: Complemental strand, 15572502 - 15572466
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatat 570  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  15572502 aatagaggttcatcttagaaccctagcctataaatat 15572466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 16112821 - 16112861
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    |||| |||||||||||||||||||||| |||||| ||||||    
T  16112821 agaggttcatcttagaaccctagcctataaatatctagtta 16112861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 542 - 602
Target Start/End: Complemental strand, 21983790 - 21983730
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  21983790 ttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 21983730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 505 - 577
Target Start/End: Original strand, 33191680 - 33191751
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||||||||||| ||||| |||||  | |||  ||||||||||||||||| ||||||| |||||| ||||||    
T  33191680 ttaaattaaataa-ttatccaacaaataaaatccagattcatcttagaaccgtagcctataaatatctagtta 33191751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 283 - 594
Target Start/End: Complemental strand, 17518 - 17203
Alignment:
Q  283 aatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaa 382  Q
    ||||||| ||||| | |||||||  | ||||||||||| |||| |||||  |||| | | ||||| |||| ||||||||||||||||||||| ||||| |    
T  17518 aatattatgtatgtcgcctccctatgtacttactttcaaggtttgctcgttttcgccatttttccgtagttactaattaattacttcatgattagacaga 17419  T
Q  383 tttacatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactagtagca 482  Q
    | | |||||||||||||||||||||||| | |||||||||||||   ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  17418 tattcatcaatattaggtaatgtcacctccctaagtgcctaagtctaggtaatgctttagaggagacaaatcttacgcaacaacagtaaaactagtagca 17319  T
Q  483 taa----agataattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaa 578  Q
    |||    | |||| |||| || |||||||||||||||||| |||| ||||| |||||||||| ||||||||| ||  |||||||||||| || | ||||     
T  17318 taataataaataactaaataaagactttaaattaaataaaatatccaacaaccagaatagaggttcatcttaaaaatctagcctaaaaagatgtggttac 17219  T
Q  579 tcatagtatctaaaga 594  Q
    |||| ||| |||||||    
T  17218 tcatggtaactaaaga 17203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 99 - 606
Target Start/End: Original strand, 23265674 - 23266188
Alignment:
Q  99 tcatctatgaatattaaaagcatatatcatactctc--tttcgatagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagag 196  Q
    ||||||| |||| ||| ||||| ||| || ||||||  | ||| |||||||||||||||||| |||||| |   |||||||||   ||||||||| |||     
T  23265674 tcatctacgaatcttagaagcacataacacactctccatctcggtagttctacaaacgagcaaccctatcaacatctaccttaccaaggtgaaaggagaa 23265773  T
Q  197 cggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatg 295  Q
     | ||||| || ||||||||||||| || |||||| ||||| |||||||| ||| ||| ||||||| ||||    || |||||||||||||| ||||||     
T  23265774 tgaagttattgggctgatttaagtcgtgaagtcacatgtttccttaattagtaactagctacttcctgattcagtcagatatgcatcaatat-aggtatt 23265872  T
Q  296 ccacctccctgagcac-ttactttcagggttcg-ctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaat 393  Q
     ||||||||| || || || || | | |||||  ||| | |||| | |||||||||| | ||||||||| |||||| | || ||||| || | |||||||    
T  23265873 tcacctccctaagtacctttctcttaaggttctactctctttcgacgtgtttccctatttactaattaactacttcctaattagacagatatgcatcaat 23265972  T
Q  394 attaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaact-agtagcataaag---at 489  Q
    ||||||||||||||||| | ||||||||||||| ||||||||  ||||||||||||| |||||||| ||||| | ||||||| | || |||||||   ||    
T  23265973 attaggtaatgtcacctccctaagtgcctaagtcagggttatttttcagaggagacatatcttacg-aacaacaataaaactaaataacataaagaaaat 23266071  T
Q  490 aattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatct 589  Q
    || |||| || ||||||||||||||||||||||| ||||| || ||||||| |||||||||||| |||| |||||||| |||||||||  |||| || ||    
T  23266072 aactaaataaagactttaaattaaataaattatccaacaaccaaaatagaggttcatcttagaatcctaacctaaaaagatttagttacacataataact 23266171  T
Q  590 aaagacaaattacaaaa 606  Q
    | ||||||| |||||||    
T  23266172 atagacaaagtacaaaa 23266188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 141 - 461
Target Start/End: Original strand, 26066719 - 26067040
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||||||||||| |||||||||| || ||||| ||||   |||||  || |||  |||||||||   |||||||||||| || ||| || ||||| ||    
T  26066719 tagttctacaaacgggcagccctatcagcgtctaacttaccaaggtgcgaggagaatggagttactacactgatttaagtcgtgaagtaacttgtttcct 26066818  T
Q  241 taattattaat-agttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggc 339  Q
    ||| || |||| ||||||| || ||||| |||| || | |||||||||||| |||| ||||||| | || ||||||| ||||||| ||||||  ||| |     
T  26066819 taagtactaattagttactacctgatttcagcatattttcatcaatattagttatgtcacctcc-taagtacttactatcagggtacgctcgttttcagt 26066917  T
Q  340 ttgtttccctagtaactaattaattacttcatgataagacaaatttacat--caatattaggtaatgtcaccttcataagtgcctaagttagggttatgc 437  Q
    ||||||| ||||| ||||| || | ||||| || | |||||||| || ||  ||||||||||  |||| |||  | ||||||||||| | ||||||||||    
T  26066918 ttgtttctctagttactaactagtcacttcctggttagacaaatataaatatcaatattaggccatgtgaccacc-taagtgcctaaatcagggttatgc 26067016  T
Q  438 ttcagaggagacaaatcttacgca 461  Q
     |||||||||||||||||||||||    
T  26067017 atcagaggagacaaatcttacgca 26067040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 141 - 369
Target Start/End: Complemental strand, 19762778 - 19762549
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    ||||||| ||||||  ||||||||| || ||||||||||   ||||| |||||||  ||||||| || ||||||||||| | || |||||| ||||| ||    
T  19762778 tagttctccaaacggacagccctatcagcgtctaccttaccaaggtgcaagaagaatggagttattgggctgatttaagacgtgaagtcacttgtttcct 19762679  T
Q  241 taattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggc 339  Q
    |||||| ||| |||||||| ||  |||  |  | || | ||||||| ||||||||| ||||||||  || ||||||| ||||||| ||||||| |||||     
T  19762678 taattactaactagttactacctcattacaatagatgttcatcaatgttaggtatgtcacctcccaaagtacttactatcagggtacgctcgctttcggt 19762579  T
Q  340 ttgtttccctagtaactaattaattacttc 369  Q
    ||||||| ||||| ||||||||||||||||    
T  19762578 ttgtttcgctagttactaattaattacttc 19762549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 284 - 449
Target Start/End: Complemental strand, 35984804 - 35984638
Alignment:
Q  284 atattaggtatgccacctccctgagca-cttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaa 382  Q
    |||||||||||| ||||||||| || | |||||| ||| ||||||||| | |||| ||| |||||||||| | |||||||||| |||  | | |||||||    
T  35984804 atattaggtatgtcacctccctaagtatcttactctcaaggttcgctctctttcgacttctttccctagttattaattaattatttctcggttagacaaa 35984705  T
Q  383 tttacatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagac 449  Q
    | ||||||||||| ||||||| |||||| | ||||||||||| | || ||||||||| |||||||||    
T  35984704 tatacatcaatatcaggtaatttcacctgcctaagtgcctaaatcagagttatgctttagaggagac 35984638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 501 - 606
Target Start/End: Complemental strand, 19762399 - 19762295
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||||||||||||||| ||||| ||||| || ||||||| || |||||||||||||||||||||||||||||||||  ||| ||| ||||| |||||||    
T  19762399 gactttaaattaaataa-ttatccaacaaacaaaatagaggtttatcttagaaccctagcctaaaaatatttagttacccatggtaactaaaaacaaatt 19762301  T
Q  601 acaaaa 606  Q
    ||||||    
T  19762300 acaaaa 19762295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 279 - 457
Target Start/End: Complemental strand, 25579279 - 25579102
Alignment:
Q  279 catcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataaga 378  Q
    ||||||||||||||||| |||||||||  | ||||||| ||||||| ||||| | ||||| ||||||  | ||| ||||| ||||||||||||| | |||    
T  25579279 catcaatattaggtatgtcacctccctatgtacttactatcagggtacgctcactttcggtttgttt--cgagttactaagtaattacttcatggttaga 25579182  T
Q  379 caaattt--acatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatctta 457  Q
    || || |  | ||||||||||||| |||||| || | ||||||||||| | | |||||||||||| |||||||||||||||    
T  25579181 cagatataaatatcaatattaggtcatgtca-ctacctaagtgcctaaatcaaggttatgcttcaaaggagacaaatctta 25579102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 504 - 606
Target Start/End: Original strand, 18226969 - 18227071
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattaca 603  Q
    |||||||||||||||||||| ||||| ||||||| |  || |||||||||||||||||||| || |||||| || |||| ||| ||||||| ||||||||    
T  18226969 tttaaattaaataaattatccaacaaccagaatatatgttaatcttagaaccctagcctaacaagatttagctactcatggtaactaaagataaattaca 18227068  T
Q  604 aaa 606  Q
    |||    
T  18227069 aaa 18227071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 488 - 606
Target Start/End: Original strand, 26121633 - 26121750
Alignment:
Q  488 ataattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtat 587  Q
    |||||| || || |||||||||||||||||||  || |||||  | ||||||| ||||||||||||||||| |||||||| |||||||||  ||| |||     
T  26121633 ataattgaataaagactttaaattaaataaatattc-aacaaataaaatagaggttcatcttagaaccctatcctaaaaagatttagttacacattgtaa 26121731  T
Q  588 ctaaagacaaattacaaaa 606  Q
    |||||||||||||||||||    
T  26121732 ctaaagacaaattacaaaa 26121750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 504 - 606
Target Start/End: Original strand, 28254148 - 28254250
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattaca 603  Q
    ||||||||||||||| |||| ||||| |||||||||| ||||| ||| || ||||| ||||||| ||||||||| |||| ||| ||||||| ||||||||    
T  28254148 tttaaattaaataaaatatccaacaaacagaatagaggttcattttataaacctaggctaaaaagatttagttactcatggtaactaaagataaattaca 28254247  T
Q  604 aaa 606  Q
    |||    
T  28254248 aaa 28254250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 13692936 - 13693008
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| ||||||||||||||||||| ||||||  |||||||| |||| ||| |||||||||||||||||||    
T  13692936 aatagaggttcatcttagaaccctagcgtaaaaagttttagttactcatggtaactaaagacaaattacaaaa 13693008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 428 - 577
Target Start/End: Original strand, 26252697 - 26252849
Alignment:
Q  428 agggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactag-tagcataaagataatta---aacaatgactttaaattaaataaattatc 523  Q
    |||||||||||||||||||||||||||||||||| | |  |||||  ||  ||||||||||| ||| |   || || ||||||||| |||||||||||||    
T  26252697 agggttatgcttcagaggagacaaatcttacgca-cgacggtaaagttaaatagcataaagagaataaccgaataaagactttaaactaaataaattatc 26252795  T
Q  524 taacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||| ||  | |||||| |||||||||||||||  | ||||||||||| ||||||    
T  26252796 taataacgataatagaaattcatcttagaacctcaacctaaaaatatgtagtta 26252849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 515 - 605
Target Start/End: Original strand, 17831007 - 17831097
Alignment:
Q  515 taaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaa 605  Q
    |||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| ||||||||| ||||  || |||| || ||||||||||    
T  17831007 taaaatatccaacaatcaaaatagaggttcatcttagaaccctaacctaaaaagatttagttactcatgataactaaggataaattacaaa 17831097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 146 - 303
Target Start/End: Original strand, 26314273 - 26314431
Alignment:
Q  146 ctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttcttaatt 245  Q
    ||||||||| |||||||||| || |||||||||| | |||||  || |||  |||||| ||   |||||||||||  || |||||| ||||| |||||||    
T  26314273 ctacaaacgggcagccctatcagcgtctaccttactaaggtgcgaggagaatggagttgctagactgatttaagttgtgaagtcacttgtttccttaatt 26314372  T
Q  246 attaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctcc 303  Q
    | ||| || ||||| |||||||| |||| || |||||||||||||| |||| |||||||    
T  26314373 actaactacttactaccagatttcagcagatctgcatcaatattagttatgtcacctcc 26314431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 18416898 - 18416988
Alignment:
Q  279 catcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttc 369  Q
    ||||||||||| ||||| ||||||||| || ||||||| ||| ||| ||||| | ||||| ||||||| ||| | ||||||||||||||||    
T  18416898 catcaatattaagtatgtcacctccctaagaacttactatcatggtacgctcactttcggtttgtttcgctatttactaattaattacttc 18416988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 24188243 - 24188315
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| |||||||||||| ||||||||||||  |||||||||  ||| ||| ||||| |||||||||||||    
T  24188243 aatagaggttcatcttagaatcctagcctaaaacgatttagttacccatggtaactaaaaacaaattacaaaa 24188315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 665
Target Start/End: Complemental strand, 19762258 - 19762205
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    |||||||||||| | ||||||||||||||| || |||||||||||||| |||||    
T  19762258 agagagactcctcccttgaagctcctagtgcttgccttcctcttgaactgcttc 19762205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 598
Target Start/End: Original strand, 22920270 - 22920363
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaa 598  Q
    |||||||||||||  |||| ||| | || ||||||| ||||||| | ||||||| |||||||| ||||||||| |||| ||| ||||| |||||    
T  22920270 ttaaattaaataacatatccaactaacataatagaggttcatctaacaaccctaacctaaaaagatttagttactcatggtaactaaaaacaaa 22920363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 606
Target Start/End: Original strand, 26308492 - 26308596
Alignment:
Q  502 actttaaattaaataaattatctaacaatcagaa-tagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||||||||||||||| |||| |||||  | || ||||| || ||||| ||||||||||||||||| ||||||||| | || ||| |||  ||||||||    
T  26308492 actttaaattaaataaaatatccaacaaaaaaaaatagag-ttgatctttgaaccctagcctaaaaagatttagttactaatggtaactaccgacaaatt 26308590  T
Q  601 acaaaa 606  Q
    ||||||    
T  26308591 acaaaa 26308596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 606
Target Start/End: Complemental strand, 25921300 - 25921236
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||||||||||||| ||| | |  ||||||||| |||| ||| |||||||||||||||||||    
T  25921300 ttcatcttagaaccctaccctgataggatttagttactcatggtaactaaagacaaattacaaaa 25921236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 601
Target Start/End: Complemental strand, 17170679 - 17170578
Alignment:
Q  498 aatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaa 597  Q
    |||||| || |||||||||| |||||||||||    ||||||| |||||||| |||||||||| |||||| |||||||||   || ||| ||||||||||    
T  17170679 aatgacattgaattaaataa-ttatctaacaaaataaatagaggttcatctttgaaccctagc-taaaaagatttagttacagatggtaactaaagacaa 17170582  T
Q  598 atta 601  Q
    ||||    
T  17170581 atta 17170578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 664
Target Start/End: Complemental strand, 20103567 - 20103516
Alignment:
Q  613 gagagactccttctttgaagctcctagtgttttccttcctcttgaaccgctt 664  Q
    ||||||||||| | |||| ||||||||||| | |||||||||||||||||||    
T  20103567 gagagactcctcccttgatgctcctagtgtctgccttcctcttgaaccgctt 20103516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 606
Target Start/End: Complemental strand, 111825 - 111720
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    |||||||| |||||||||  ||| ||||| |||| ||  |||||| |||| |||||||||||||||| | || |||| | || |||  |||| |||||||    
T  111825 gactttaagttaaataaaacatccaacaaacagattatggattcaacttataaccctagcctaaaaagacttggttacttatggtaattaaacacaaatt 111726  T
Q  601 acaaaa 606  Q
    ||||||    
T  111725 acaaaa 111720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 606
Target Start/End: Complemental strand, 17470401 - 17470297
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    |||| |||||||||||| ||||| |||||  | || | || |||||||||||||| ||||||||||| |||||||||  ||| ||| ||||| |  ||||    
T  17470401 gactataaattaaataa-ttatccaacaaataaaacataggttcatcttagaaccttagcctaaaaagatttagttatccatggtaactaaaaagtaatt 17470303  T
Q  601 acaaaa 606  Q
    ||||||    
T  17470302 acaaaa 17470297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 601
Target Start/End: Complemental strand, 19007609 - 19007552
Alignment:
Q  544 catcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatta 601  Q
    |||||||||||  || ||||||||||||||||||  ||| ||||||||| ||||||||    
T  19007609 catcttagaacagtaacctaaaaatatttagttatacatggtatctaaaaacaaatta 19007552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 475
Target Start/End: Complemental strand, 19081131 - 19081071
Alignment:
Q  414 taagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaact 475  Q
    ||||||||||| | ||||||||| || | |||||||||||||||||| || |||||||||||    
T  19081131 taagtgcctaaatcagggttatgttttaaaggagacaaatcttacgc-acgatagtaaaact 19081071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 20859687 - 20859752
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  20859687 agaggttcatcttagaactctaacctaaaaaaatttagttacacatggtaactaaaaacaaattac 20859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 612 - 665
Target Start/End: Complemental strand, 23013715 - 23013662
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||||||| |||||||||||||||||||  ||  |||||||||||||| ||||    
T  23013715 agagagacttcttctttgaagctcctagtacttgtcttcctcttgaacctcttc 23013662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 24261370 - 24261427
Alignment:
Q  535 atagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaa 592  Q
    |||||| |||||| || |||||||||||||||| ||||||||| |||| ||| |||||    
T  24261370 atagaggttcatcataaaaccctagcctaaaaagatttagttactcatggtaactaaa 24261427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 606
Target Start/End: Complemental strand, 20533254 - 20533183
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||||||||||||||||||| |||| ||||| ||  ||| |||| |||| ||| | |||||||||||||||||    
T  20533254 aatagagattcatcttagaa-cctaccctaataaggttttgttactcatggtaacaaaagacaaattacaaaa 20533183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 506 - 606
Target Start/End: Original strand, 22871641 - 22871739
Alignment:
Q  506 taaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaa 605  Q
    |||||||||||| ||||| |||||  | ||||||| ||||||||||||||||| ||| |||||||||| | |  ||| ||| ||||| || |||||||||    
T  22871641 taaattaaataa-ttatccaacaaataaaatagaggttcatcttagaacccta-cctcaaaatatttaatcacccatggtaactaaaaactaattacaaa 22871738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 24164489 - 24164445
Alignment:
Q  202 ttactgagctgatttaagtcatggagtcacctgttttcttaatta 246  Q
    |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  24164489 ttactgggctgatttaagtcatgaagtcacttgtttccttaatta 24164445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 24264534 - 24264494
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    |||| ||||||||||||||||||| || |||||||||||||    
T  24264534 agaggttcatcttagaaccctagcatataaatatttagtta 24264494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 24341164 - 24341124
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    |||| ||||||||||||||||||| || |||||||||||||    
T  24341164 agaggttcatcttagaaccctagcatataaatatttagtta 24341124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 613 - 665
Target Start/End: Original strand, 28279731 - 28279783
Alignment:
Q  613 gagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    |||||| |||| | || ||||||||||||||| |||||||||| |||||||||    
T  28279731 gagagagtcctcccttaaagctcctagtgtttgccttcctcttaaaccgcttc 28279783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 7e-51; HSPs: 54)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 160 - 606
Target Start/End: Original strand, 13708088 - 13708546
Alignment:
Q  160 ccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttact 258  Q
    |||||| |||||||||||||   |||||||| ||||| |||||||||||||| ||||||||| || |||||| | ||| || ||||| ||| ||||||||    
T  13708088 ccctatcagtgtctaccttaccaaggtgaaacaagagtggagttactgagcttatttaagtcgtgaagtcacttatttcctcaattactaactagttact 13708187  T
Q  259 tccagattttagcacatatgcatcaatattaggtatgccacctccctg--agcac-ttactttcagggttcgc-tcgcattcggcttgtttcccta---- 350  Q
    ||| | || ||||| |||| ||||||||||||||||| |||| | ||   || || || || |||||||||   || | ||| |  ||||||||||        
T  13708188 tcctggttctagcatatatacatcaatattaggtatgtcacccctctataagtacctttctctcagggttcttatctc-ttcagtgtgtttccctaccta 13708286  T
Q  351 gtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagaca 450  Q
    || ||||||| |||||||| |||| | ||| || |||||||||||||||||||||||||| | |||||||||||||  ||||||||||| ||||||||||    
T  13708287 gttactaattcattacttcttgattaaacatatatacatcaatattaggtaatgtcacctccctaagtgcctaagtctgggttatgctttagaggagaca 13708386  T
Q  451 aatcttacgcaacaatagtaaaactagtagcataaag----ataattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcat 546  Q
    |||||||||||  || |  ||||  | ||||||||||    |||| |||| || || |||||||||||||||| ||| || || |||||||||| |||||    
T  13708387 aatcttacgcacgaaaataaaaataaatagcataaagagaaataactaaataaagaatttaaattaaataaatcatccaataaccagaatagaggttcat 13708486  T
Q  547 cttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||||||||||||| | | |||||||    ||| ||| |||||||||||||||||||    
T  13708487 cttagaaccctagcctacagagatttagtatcacatggtaactaaagacaaattacaaaa 13708546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 137 - 606
Target Start/End: Complemental strand, 15612190 - 15611708
Alignment:
Q  137 tcgatagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgtt 236  Q
    |||||||||||||||||| | |||||||| || |||||| |||   ||||||||||| |  |||||||| ||| ||||||||||  |  |||||| ||||    
T  15612190 tcgatagttctacaaacgggtagccctatcagcgtctactttaccaaggtgaaagaaaaatggagttaccgagttgatttaagttgtaaagtcacatgtt 15612091  T
Q  237 ttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcatt 335  Q
    | |||||||| ||| | |||||| |  ||||| | || || || |||||||||| ||||  || ||| || |  ||||||| ||| ||| ||||||| ||    
T  15612090 tccttaattactaacttgttactacttgatttaaacatatgtgtatcaatattatgtatctcatctcgctaaatacttactatcaaggtacgctcgcttt 15611991  T
Q  336 cggcttgtttccctagtaactaattaattacttcatgataagacaaattt---------acatcaatattaggtaatgtcaccttcataagtgcctaagt 426  Q
    | | ||||||  ||||| |||||||||||||||  |||| |||||||| |         ||||||||||||||||||||||||| | | | || ||||||    
T  15611990 cagtttgtttagctagttactaattaattactttctgattagacaaatattatttttatacatcaatattaggtaatgtcacctcccttactgactaagt 15611891  T
Q  427 tagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaact-agtagcata---aagataattaaac-aatgactttaaattaaataaatta 521  Q
     ||||||||||||||| ||||||||||||||||| || ||||||| ||| | || || |   || |||| ||||| || |||||| |||||||| ||||     
T  15611890 cagggttatgcttcaggggagacaaatcttacgc-actatagtaagactaaataacaaacagaacataactaaacaaaagactttgaattaaat-aattt 15611793  T
Q  522 tctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    || ||||| || ||||||| |||||| ||||||||||||||||| | ||||||||| |||||| | || ||||||||||||||||    
T  15611792 tccaacaaacaaaatagaggttcatcatagaaccctagcctaaagagatttagttactcatagaaacttaagacaaattacaaaa 15611708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 144 - 410
Target Start/End: Original strand, 5798099 - 5798361
Alignment:
Q  144 ttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttcttaa 243  Q
    ||||||||||| ||| | ||||||| |||||| ||| |||||||||| ||| |||||||||||  ||| ||||||||||||       ||| || ||| |    
T  5798099 ttctacaaacgggcaacactattagcgtctactttactgaggtgaaataagggcggagttactttgctaatttaagtcatga------ctgcttccttca 5798192  T
Q  244 ttattaa--tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggctt 341  Q
    | | | |  ||||||||||| || ||||||| ||||  |||||||||||||||| ||||||||  || |||| ||||||||||| || ||| |||||| |    
T  5798193 taactcaactagttacttcctgagtttagcagatataaatcaatattaggtatgtcacctccccaaggactttctttcagggtttgcgcgctttcggcgt 5798292  T
Q  342 gtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtcacct 410  Q
     |||||||||| |||||||  ||||||| |||| |||| ||| ||||||||||||||||||||||||||    
T  5798293 ctttccctagttactaattctttacttcttgatcagaccaatatacatcaatattaggtaatgtcacct 5798361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 501 - 606
Target Start/End: Complemental strand, 9863530 - 9863426
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||||||||||||||| ||||| |||||  ||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||    
T  9863530 gactttaaattaaataa-ttatccaacaaatagaatagaggttcatcttagaacactaccctaaaaatatttagttaatcatggtaactaaagacaaatt 9863432  T
Q  601 acaaaa 606  Q
    ||||||    
T  9863431 acaaaa 9863426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 428 - 606
Target Start/End: Complemental strand, 21884476 - 21884296
Alignment:
Q  428 agggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactag-tagcat---aaagataattaaacaatgactttaaattaaataaattatc 523  Q
    ||||| ||| |||||||||||||||||||||||| | ||||||||| ||  ||||||   ||| ||||| ||  || ||||||||||| |||||||||||    
T  21884476 agggtcatgtttcagaggagacaaatcttacgca-cgatagtaaaattaaatagcattcgaaaaataatgaataaa-gactttaaatttaataaattatc 21884379  T
Q  524 taacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
     ||||| || ||||||| ||||| |||||||| ||||||||||| ||||||||| |||| ||| |||||||||||||||||||    
T  21884378 caacaaacataatagaggttcatgttagaaccttagcctaaaaagatttagttactcatggtaactaaagacaaattacaaaa 21884296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 385 - 606
Target Start/End: Original strand, 9917345 - 9917570
Alignment:
Q  385 tacatcaatattaggtaatgtcaccttcataagtgcctaagtt--agggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactagt-agc 481  Q
    ||||||||||||||||| |||||||| | |||||||||| ||   ||||||||| ||| ||  |||||||||||||||| | | ||||||| || | ||     
T  9917345 tacatcaatattaggta-tgtcacctccctaagtgcctatgtatcagggttatgattctgacaagacaaatcttacgca-cgacagtaaaattaattagt 9917442  T
Q  482 ataaagataat---taaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaa 578  Q
     |||||| |||   | ||||| ||||||||||||||||||||||| | ||| || |||||||  ||||||||||||||||| ||||||||||||||| |     
T  9917443 gtaaagaaaatacctgaacaaagactttaaattaaataaattatccagcaaccataatagaggctcatcttagaaccctagtctaaaaatatttagtcac 9917542  T
Q  579 tcatagtatctaaagacaaattacaaaa 606  Q
     ||| ||| |||||||||||||||||||    
T  9917543 acatggtaactaaagacaaattacaaaa 9917570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 385 - 606
Target Start/End: Original strand, 9925257 - 9925482
Alignment:
Q  385 tacatcaatattaggtaatgtcaccttcataagtgcctaagtt--agggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactagt-agc 481  Q
    ||||||||||||||||| |||||||| | |||||||||| ||   ||||||||| ||| ||  |||||||||||||||| | | ||||||| || | ||     
T  9925257 tacatcaatattaggta-tgtcacctccctaagtgcctatgtatcagggttatgattctgacaagacaaatcttacgca-cgacagtaaaattaattagt 9925354  T
Q  482 ataaagataat---taaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaa 578  Q
     |||||| |||   | ||||| ||||||||||||||||||||||| | ||| || |||||||  ||||||||||||||||| ||||||||||||||| |     
T  9925355 gtaaagaaaatacctgaacaaagactttaaattaaataaattatccagcaaccataatagaggctcatcttagaaccctagtctaaaaatatttagtcac 9925454  T
Q  579 tcatagtatctaaagacaaattacaaaa 606  Q
     ||| ||| |||||||||||||||||||    
T  9925455 acatggtaactaaagacaaattacaaaa 9925482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 430 - 606
Target Start/End: Complemental strand, 21911796 - 21911616
Alignment:
Q  430 ggttatgcttcagaggagacaaatcttacgcaaca-atagtaaaactag-tagcata-aagata-attaaacaatgactttaaattaaataaattatcta 525  Q
    ||||||||||||||||||||||||||||||||  | ||||||||  ||  ||||||  || ||| ||| || || ||||||||||||||||||||||| |    
T  21911796 ggttatgcttcagaggagacaaatcttacgcacgatatagtaaacttaaatagcattcaaaatatattgaataaagactttaaattaaataaattatcca 21911697  T
Q  526 acaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||| || |||| || ||||| |||||||| ||||||||||| ||||||||| |||| ||| ||||||| |||||||||||    
T  21911696 acaaacataataaaggttcatgttagaaccttagcctaaaaagatttagttattcatggtaactaaagaaaaattacaaaa 21911616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 198 - 461
Target Start/End: Original strand, 5530723 - 5530987
Alignment:
Q  198 ggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgc 296  Q
    ||||||| || ||||||||||||| || || ||| ||||| |||||||| ||| |||||||| || ||||| |||| || |||||||||||||| ||||     
T  5530723 ggagttattgggctgatttaagtcgtgaagccacttgtttccttaattactaactagttactgcctgatttcagcagatttgcatcaatattagttatgt 5530822  T
Q  297 cacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaatttac--atcaata 394  Q
    |  |||| | || ||||||| | ||||| | ||||| || || ||||||| ||||| |||||||||||||||  |  | |||||||||||   |||||||    
T  5530823 cgactcc-taagtacttactattagggtacactcgctttgggtttgtttcactagttactaattaattactttctagttagacaaatttaagtatcaata 5530921  T
Q  395 ttaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgca 461  Q
    |||||| ||||||| | | ||||||||||| | ||||||   || ||||||||||||||||||||||    
T  5530922 ttaggtcatgtcac-tacctaagtgcctaaatcagggttgcactccagaggagacaaatcttacgca 5530987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 498 - 606
Target Start/End: Complemental strand, 6040132 - 6040025
Alignment:
Q  498 aatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaa 597  Q
    |||||||||||||||||||| ||||| |||||  | ||||||| ||||||||| |||||||||||||||||||||||||| |||| ||| ||||| ||||    
T  6040132 aatgactttaaattaaataa-ttatccaacaaataaaatagaggttcatcttaaaaccctagcctaaaaatatttagttactcatggtaactaaaaacaa 6040034  T
Q  598 attacaaaa 606  Q
    |||| ||||    
T  6040033 attaaaaaa 6040025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 279 - 461
Target Start/End: Original strand, 1882987 - 1883170
Alignment:
Q  279 catcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataaga 378  Q
    ||||||||||||||||| ||| ||||  || ||||||| | ||| | ||||||| || || ||||||| ||||| | |||||||||||||| || | ||     
T  1882987 catcaatattaggtatgtcacatcccaaagtacttactattaggatacgctcgcttttggtttgtttcactagttaataattaattacttcctggttagt 1883086  T
Q  379 caaatttacat--caatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgca 461  Q
    || || || ||  |||||||||   ||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  1883087 catatataaatatcaatattagtctatgtcac-tacataagtgcctaaatcagggttatgcttcagaggagacaaatcttacgca 1883170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 501 - 606
Target Start/End: Complemental strand, 5221814 - 5221710
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||||||||||||||| |||| |||||| |||||||||| ||||||||||||| |||||||||||| |||||||||  ||| ||| | ||| |||||||    
T  5221814 gactttaaattaaataa-ttatataacaaacagaatagaggttcatcttagaactctagcctaaaaagatttagttacccatggtaacaaaaaacaaatt 5221716  T
Q  601 acaaaa 606  Q
    ||||||    
T  5221715 acaaaa 5221710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 211 - 606
Target Start/End: Original strand, 10938274 - 10938672
Alignment:
Q  211 tgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccct-gag 308  Q
    |||| ||| ||||| |||||| ||||| |||||||| ||| ||||||||||| |||| | |||  |||| | |||||||||||||| ||||||||| ||     
T  10938274 tgatataaatcatgaagtcacttgtttccttaattactaactagttacttcctgattctcgcaggtatggaccaatattaggtatgtcacctccctcgat 10938373  T
Q  309 cacttactttcagggttc-gctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtca 407  Q
      ||| ||  |||||||| ||||   |  || ||||||||||||| ||||| |||||||||| |||| | | |  | || | |||||||||||| |||||    
T  10938374 acctttctcacagggttctgctc---tatggattgtttccctagttactaactaattacttcttgattatatatgtataaaccaatattaggta-tgtca 10938469  T
Q  408 ccttcataagtgcctaagtta---gggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactag-tagcat---aaagataattaaacaat 500  Q
    ||||| |||||||||| ||||   ||||||||||  |||||||||||||||||| || ||  ||||||| ||  || |||   | | |||| | || ||     
T  10938470 ccttcctaagtgccta-gttatcagggttatgctctagaggagacaaatcttacacaccac-agtaaaattaaataacattcgagaaataactgaataaa 10938567  T
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
     ||||||||||||||||||   | ||||| || ||||||| |||||||||||||||||||||||||| ||||||||| | |  ||| |||||||||||||    
T  10938568 aactttaaattaaataaatacgc-aacaaacataatagaggttcatcttagaaccctagcctaaaaagatttagttacttagggtaactaaagacaaatt 10938666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 414 - 606
Target Start/End: Original strand, 22468192 - 22468387
Alignment:
Q  414 taagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactag-tagcata---aagataattaaacaat-gactttaa 508  Q
    ||||||||||| | || ||||| ||||||||||||||||||||||||| | ||||||||||||  ||||  |   |||||||  ||| ||  ||||||||    
T  22468192 taagtgcctaaatcagagttatacttcagaggagacaaatcttacgca-ctatagtaaaactaaatagcgaacagaagataacaaaataaaagactttaa 22468290  T
Q  509 attaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||||| ||||  ||||| || ||||||| ||||||||||||||||| |||||||| |||||||||  | | ||| ||||| |||||||||||||    
T  22468291 attaaataa-ttattcaacaaacaaaatagaggttcatcttagaaccctatcctaaaaagatttagttacccttggtaactaaaaacaaattacaaaa 22468387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 198 - 369
Target Start/End: Original strand, 10649927 - 10650098
Alignment:
Q  198 ggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgc 296  Q
    ||||| ||||||||||||||||||||| |||||   |||| |||||||| ||| |||||||| |  ||||| |||| || | |||||||||| ||||||     
T  10649927 ggagtcactgagctgatttaagtcatgaagtcata-gtttccttaattactaactagttactacttgatttcagcatatgttcatcaatatttggtatgt 10650025  T
Q  297 cacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttc 369  Q
    ||||| ||| || ||||||| ||||||| | ||| | ||||| ||||||| ||||| | ||||||||||||||    
T  10650026 caccttcctaagtacttactatcagggtacactctctttcggtttgtttcactagttaataattaattacttc 10650098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 502 - 606
Target Start/End: Original strand, 10650249 - 10650352
Alignment:
Q  502 actttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatta 601  Q
    |||||||||||||||||| ||| |||||    ||| ||| |||||||||||||| ||||||||||||||||| ||| |||||||| ||||| ||||||||    
T  10650249 actttaaattaaataaat-atccaacaaatgaaattgaggttcatcttagaaccgtagcctaaaaatatttaattactcatagtaactaaaaacaaatta 10650347  T
Q  602 caaaa 606  Q
    |||||    
T  10650348 caaaa 10650352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 501 - 606
Target Start/End: Original strand, 18467622 - 18467725
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    |||||| |||||||||| ||||| ||||| || ||||||||||||||||||||| || |||| |||||||||||||| |||| |||  |||| |||||||    
T  18467622 gactttgaattaaataa-ttatccaacaaacaaaatagagattcatcttagaacgctggcct-aaaatatttagttactcatggtaagtaaaaacaaatt 18467719  T
Q  601 acaaaa 606  Q
    ||||||    
T  18467720 acaaaa 18467725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 564
Target Start/End: Complemental strand, 4901151 - 4901089
Alignment:
Q  502 actttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaa 564  Q
    ||||||||||||||||| |||| ||||| |||||||||| |||||||||||||| ||||||||    
T  4901151 actttaaattaaataaaatatccaacaaacagaatagaggttcatcttagaaccttagcctaa 4901089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 606
Target Start/End: Original strand, 9501273 - 9501377
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    |||||||||| |||||| ||||| ||||| |||| ||||| |||||||||||||||||||||||||| ||||| |||  ||| ||| ||||| | ||||     
T  9501273 gactttaaatcaaataa-ttatccaacaaacagagtagaggttcatcttagaaccctagcctaaaaagatttaattacccatggtaactaaaaataaatc 9501371  T
Q  601 acaaaa 606  Q
    ||||||    
T  9501372 acaaaa 9501377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 534 - 606
Target Start/End: Complemental strand, 10991714 - 10991642
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||||||  |||| ||||||||||||||||||||  |||||||| |||| ||| |||||||||||||||||||    
T  10991714 aatagagggtcatattagaaccctagcctaaaaaggtttagttactcatggtacctaaagacaaattacaaaa 10991642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 542 - 606
Target Start/End: Original strand, 18448938 - 18449002
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||||||||||||||||| ||||||| |||||||||  ||| ||| |||||||||||||||||||    
T  18448938 ttcatcttagaaccctagactaaaaagatttagttacacatggtaactaaagacaaattacaaaa 18449002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 606
Target Start/End: Original strand, 5484939 - 5485028
Alignment:
Q  517 aattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| ||||| || ||||||| |||||||||||||| | ||||||||| |||||||||  |||  || ||||| |||||||||||||    
T  5484939 aattatccaacaaacaaaatagaggttcatcttagaaccatggcctaaaaagatttagttacccatgataactaaaaacaaattacaaaa 5485028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 606
Target Start/End: Original strand, 21502167 - 21502271
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||||||||||||||| ||||| ||  |  | ||||||| ||||||||||||||||||| |||||| |||||||||   || ||| ||||| |||||||    
T  21502167 gactttaaattaaataa-ttatccaatgaataaaatagaggttcatcttagaaccctagcgtaaaaagatttagttaccaatggtaactaaaaacaaatt 21502265  T
Q  601 acaaaa 606  Q
    ||||||    
T  21502266 acaaaa 21502271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 665
Target Start/End: Original strand, 2454792 - 2454844
Alignment:
Q  613 gagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||||| ||||| |||||||||||| || |||||||||||||||||||||||    
T  2454792 gagagaccccttccttgaagctcctaatgctttccttcctcttgaaccgcttc 2454844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 577
Target Start/End: Complemental strand, 8310591 - 8310520
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||||||||||| ||||| |||||    |||||||||||||||||||||||||||||| |||||| ||||||    
T  8310591 ttaaattaaataa-ttatccaacaaaactaatagagattcatcttagaaccctagcctataaatatctagtta 8310520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 668
Target Start/End: Complemental strand, 9863389 - 9863333
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttcatt 668  Q
    |||||||||||| ||||||||||| ||||| || ||||||||| |||||||||||||    
T  9863389 agagagactcctcctttgaagctcatagtgcttgccttcctctcgaaccgcttcatt 9863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 9891162 - 9891234
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| ||||||||||||||||| ||||| |   |||||||| |||| ||| |||||||||||||||||||    
T  9891162 aatagaggttcatcttagaaccctatcctaatagggtttagttactcatggtaactaaagacaaattacaaaa 9891234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 539 - 606
Target Start/End: Original strand, 9288261 - 9288328
Alignment:
Q  539 agattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||||||||||||||||||||| ||||||||||||||||  ||| ||| ||||| | || ||||||||    
T  9288261 agattcatcttagaaccctagcttaaaaatatttagttacccatggtaactaaaaataacttacaaaa 9288328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 539 - 606
Target Start/End: Original strand, 9298053 - 9298120
Alignment:
Q  539 agattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||||||||||||||||||||| ||||||||||||||||  ||| ||| ||||| | || ||||||||    
T  9298053 agattcatcttagaaccctagcttaaaaatatttagttacccatggtaactaaaaataacttacaaaa 9298120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 605
Target Start/End: Original strand, 9721872 - 9721989
Alignment:
Q  488 ataattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccc-tagcctaaaaatatttagttaatcatagta 586  Q
    |||| |||| || |||||||||||||| ||||  || |||||  | ||||||| |  |||||||||||| ||||||||||||||||||||| |||| |||    
T  9721872 ataactaaataaagactttaaattaaaaaaatattc-aacaaatataatagaggtatatcttagaacccctagcctaaaaatatttagttactcatggta 9721970  T
Q  587 tctaaagacaaattacaaa 605  Q
     ||||||| ||| ||||||    
T  9721971 actaaagataaagtacaaa 9721989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 665
Target Start/End: Complemental strand, 5221673 - 5221620
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    |||||||||||| | |||||||||||| || || ||||||||||||||||||||    
T  5221673 agagagactcctcccttgaagctcctaatgcttgccttcctcttgaaccgcttc 5221620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 665
Target Start/End: Original strand, 5485069 - 5485118
Alignment:
Q  616 agactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    |||||||| | ||||||||||||||| ||| |||||||||||||||||||    
T  5485069 agactcctcccttgaagctcctagtgcttttcttcctcttgaaccgcttc 5485118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 668
Target Start/End: Original strand, 8158442 - 8158483
Alignment:
Q  627 ttgaagctcctagtgttttccttcctcttgaaccgcttcatt 668  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  8158442 ttgaagctcctagtgtttgccttcctcttgaaccacttcatt 8158483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 9501182 - 9501227
Alignment:
Q  414 taagtgcctaagttagggttatgcttcagaggagacaaatcttacg 459  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||||    
T  9501182 taagggcctaaattaaggttatgcttcagaggagacaaatcttacg 9501227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 665
Target Start/End: Original strand, 9501414 - 9501467
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||||| |||| | |||||||||| |||| |||||||||||||||||||||||    
T  9501414 agagagaatcctcccttgaagctcccagtgatttccttcctcttgaaccgcttc 9501467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 601
Target Start/End: Original strand, 6006976 - 6007071
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatta 601  Q
    ||||||||||||| ||||| |||||    ||||||| |||||||||||||| || ||||| || |||||||||  ||| ||| ||||||||||||||    
T  6006976 ttaaattaaataa-ttatccaacaaaataaatagaggttcatcttagaaccataacctaataagatttagttacacatggtaactaaagacaaatta 6007071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 665
Target Start/End: Original strand, 8038503 - 8038538
Alignment:
Q  630 aagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||||||||||||||||||||||||||||| ||||    
T  8038503 aagctcctagtgttttccttcctcttgaaccacttc 8038538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 1874166 - 1874212
Alignment:
Q  412 cataagtgcctaagttagggttatgcttcagaggagacaaatcttac 458  Q
    ||||||||||||| | |||||||| ||| ||||||||||||||||||    
T  1874166 cataagtgcctaaatcagggttatactttagaggagacaaatcttac 1874212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 606
Target Start/End: Original strand, 8038380 - 8038450
Alignment:
Q  536 tagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||| ||||| ||||||||||||| ||||||  || | ||| |||| ||| |||||||||||||||||||    
T  8038380 tagaggttcattttagaaccctagcttaaaaaggttaatttactcatggtaactaaagacaaattacaaaa 8038450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 577
Target Start/End: Complemental strand, 9612675 - 9612613
Alignment:
Q  515 taaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||| ||| ||||| || ||||||| |||||||| |||||| ||||||||||| ||||||||    
T  9612675 taaataatccaacaaacaaaatagaggttcatctttgaacccaagcctaaaaatgtttagtta 9612613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 577
Target Start/End: Complemental strand, 9840246 - 9840184
Alignment:
Q  515 taaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||| ||| ||||| || ||||||| |||||||| |||||| ||||||||||| ||||||||    
T  9840246 taaataatccaacaaacaaaatagaggttcatctttgaacccaagcctaaaaatgtttagtta 9840184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 599
Target Start/End: Complemental strand, 3586283 - 3586218
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaat 599  Q
    ||||||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| ||||||    
T  3586283 aatagaggttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaat 3586218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 4449995 - 4450060
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  4449995 agaggttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 4450060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 612 - 665
Target Start/End: Complemental strand, 4901011 - 4900958
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||| || ||| ||||||||||||||||| || |||| |||||||||||||||    
T  4901011 agagaaacacctcctttgaagctcctagtgcttgcctttctcttgaaccgcttc 4900958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 461
Target Start/End: Complemental strand, 9863607 - 9863574
Alignment:
Q  428 agggttatgcttcagaggagacaaatcttacgca 461  Q
    |||||||||||| |||||||||||||||||||||    
T  9863607 agggttatgcttaagaggagacaaatcttacgca 9863574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 11218796 - 11218691
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||||||||||| | |||||||| || || |||||||   |||||  || |||  ||||| |||| |||||||||||||||| |||| | ||||| ||    
T  11218796 tagttctacaaacgggaagccctatcagcgtataccttaccaaggtgcgaggagaatggagtaactgggctgatttaagtcatgaagtcgcttgtttcct 11218697  T
Q  241 taatta 246  Q
    ||||||    
T  11218696 taatta 11218691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 11804057 - 11804122
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| ||||||||||||||||||  ||| ||| ||||| | |||||||    
T  11804057 agaggttcatcttagaactctaacctaaaaatatttagttacacatggtaactaaaaaaaaattac 11804122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 606
Target Start/End: Complemental strand, 24752015 - 24751918
Alignment:
Q  510 ttaaataaatta-tctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||||||||||| || ||||| || ||||| | || || ||||||||||| ||||||||  |||||||| |||| ||| ||||| | |||||||||||    
T  24752015 ttaaataaattaatccaacaaacaaaatagtggtttattttagaaccctaacctaaaaaagtttagttactcatggtaactaaaaaaaaattacaaaa 24751918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 505 - 577
Target Start/End: Original strand, 1588499 - 1588570
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||||||||||||| ||| |||||    ||||||| |||||||||||| ||||||||| |||||| ||||||    
T  1588499 ttaaattaaataaat-atccaacaaaacaaatagaggttcatcttagaatcctagcctataaatatctagtta 1588570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 505 - 577
Target Start/End: Original strand, 3735601 - 3735671
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||||||||||| ||||| ||||| || |||| || ||||||||||||||||| |||| |||||| ||||||    
T  3735601 ttaaattaaataa-ttatccaacaaaca-aataaaggttcatcttagaaccctaacctataaatatctagtta 3735671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 602
Target Start/End: Original strand, 9134125 - 9134193
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||| ||||||||||||| ||| |||||||| | |||||||  ||| ||| ||||| |||||||||    
T  9134125 aatagaggttcatcttagaactctaacctaaaaagaattagttatacatggtaactaaaaacaaattac 9134193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 19394274 - 19394346
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| ||||||||| |||| ||||||||||| || || ||| | || |||| |||||| |||||||||||    
T  19394274 aatagaggttcatcttataaccttagcctaaaaagatatatttacttatggtatataaagaaaaattacaaaa 19394346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 542 - 602
Target Start/End: Original strand, 23297692 - 23297752
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  23297692 ttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 23297752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 542 - 602
Target Start/End: Complemental strand, 39272224 - 39272164
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  39272224 ttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 39272164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 183 - 602
Target Start/End: Original strand, 27124 - 27530
Alignment:
Q  183 aggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcat 281  Q
    |||||||||||||| ||||||| ||  | ||||||| ||    ||||||| |||| |||||||| ||| |||||| |||| |||||| ||| |||||| |    
T  27124 aggtgaaagaagagtggagttattggacagatttaaatcgcaaagtcacccgtttccttaattactaactagttatttcctgattttggcatatatgcgt 27223  T
Q  282 caatattaggtatgccacctccctgagcac-ttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagaca 380  Q
    |||||||||||||| ||||||||| || || || || ||||||||||| |   |||  ||||||| |||||| |||||||||||||||| | || |||||    
T  27224 caatattaggtatgtcacctccctaagtacctttctatcagggttcgccctt-ttcaacttgttttcctagttactaattaattacttcctaattagaca 27322  T
Q  381 aattta--catcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactagt 478  Q
     || ||  |||||||||||||||||||||||| | |||||||||| || ||||||||||||| ||||||||||||||||| |  | | |||||||||       
T  27323 tatatatacatcaatattaggtaatgtcacctccctaagtgcctatgtcagggttatgcttctgaggagacaaatcttacac-gcgacagtaaaact--- 27418  T
Q  479 agcataaagataattaaacaatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaa 578  Q
           | |||| |||| || ||||     ||||||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||     
T  27419 -------aaataactaaataaagact-----ttaaataaattctccaacaaccagaatagaggttcatcttagaaccctagcctaaaaatatttagttac 27506  T
Q  579 tcatagtatctaaagacaaattac 602  Q
      || |||  ||||||||||||||    
T  27507 atatggtaattaaagacaaattac 27530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 302
Target Start/End: Complemental strand, 183936 - 183831
Alignment:
Q  198 ggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgc 296  Q
    |||||||||| |||||||||||||||| |||||| ||||| ||||||||  || |||||||| || || ||  ||| || |  ||||||||||||||||     
T  183936 ggagttactgggctgatttaagtcatgaagtcacttgtttccttaattaccaactagttactgcctgaattcggcagatgtttatcaatattaggtatgt 183837  T
Q  297 cacctc 302  Q
    ||||||    
T  183836 cacctc 183831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 99 - 461
Target Start/End: Original strand, 25939679 - 25940043
Alignment:
Q  99 tcatctatgaatattaaaagcatatatcatactctc--tttcgatagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagag 196  Q
    |||||||||||| ||||||| | |||  | ||||||  | ||| |||||||||||||| | || ||||| || ||||||||||   ||||||||| |||     
T  25939679 tcatctatgaatcttaaaagaacatagaacactctccctctcggtagttctacaaacggggagacctatcagcgtctaccttaccaaggtgaaaggagaa 25939778  T
Q  197 cggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatg 295  Q
     ||| ||||||  || |||||||||||| |||||| ||||| |||||||| ||| || ||||| || | ||| |  | |||||||||||||||||||||     
T  25939779 tggaattactggacttatttaagtcatgaagtcacatgtttccttaattactaactaattactacctggtttcaatagatatgcatcaatattaggtata 25939878  T
Q  296 ccacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatat 395  Q
     |||| |||| |  ||||||| ||||||| ||||| | ||||| ||||||| ||||| |||||| ||||||||| | || | ||| || |||||||||||    
T  25939879 tcaccaccctaattacttactctcagggtacgctcactttcggtttgtttcgctagttactaatcaattacttcctaattacacatatatacatcaatat 25939978  T
Q  396 taggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgca 461  Q
    ||||| ||||||||| | |||||| |||| |  || |||| |||||||||||||||||||||||||    
T  25939979 taggt-atgtcacctccctaagtgtctaattccggattatacttcagaggagacaaatcttacgca 25940043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 184 - 606
Target Start/End: Original strand, 27420001 - 27420428
Alignment:
Q  184 ggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatc 282  Q
    |||||||||| |  ||||||  || ||| ||||||||| |  |||||||||||| |||||||| ||| |||||| | || ||||| |||| || | ||||    
T  27420001 ggtgaaagaataatggagtttttgggctcatttaagtcgtaaagtcacctgtttccttaattactaactagttattacctgatttcagcagattttcatc 27420100  T
Q  283 aatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaa 382  Q
    |||||||||||||  |||||||| || |||||||  |||||| |||| || ||| | ||||||| ||||| |||||||||||||||| || | ||| | |    
T  27420101 aatattaggtatgtaacctccctaagtacttactaacagggtacgctagctttcaggttgtttctctagttactaattaattacttcctggttagataga 27420200  T
Q  383 ttt--acatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaact-agta 479  Q
    | |  | |||||||||||   |||||||    || ||||||||| | ||||||||||||||||||||||||||||||||| || ||| ||||||| | ||    
T  27420201 tataaatatcaatattagaccatgtcacacatattagtgcctaaatcagggttatgcttcagaggagacaaatcttacgc-actataataaaactaaata 27420299  T
Q  480 gcataaagataat---taaac-aatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagt 575  Q
    ||  | ||| |||   | ||| ||  ||||||  |||||| ||||||| ||||| || || |||| |||||||||||||||||| |||||||||||||||    
T  27420300 gcgaacagaaaatagctgaacaaaacactttattttaaat-aattatccaacaaaca-aaaagaggttcatcttagaaccctaggctaaaaatatttagt 27420397  T
Q  576 taatcatagtatctaaagacaaattacaaaa 606  Q
    ||  ||| ||| ||||  |||||||||||||    
T  27420398 tacccatggtaactaataacaaattacaaaa 27420428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 184 - 461
Target Start/End: Original strand, 27418855 - 27419135
Alignment:
Q  184 ggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatc 282  Q
    |||||||||| |  ||||||  || ||| ||||||||| |  |||||||||||| |||||||| ||| |||||| | || ||||| |||| || | ||||    
T  27418855 ggtgaaagaataatggagtttttgggctcatttaagtcgtaaagtcacctgtttccttaattactaactagttattacctgatttcagcagattttcatc 27418954  T
Q  283 aatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaa 382  Q
    |||||||||||||  |||||||| || |||||||  |||||| |||| || ||| | ||||||| ||||| |||||||||||||||| || | ||| | |    
T  27418955 aatattaggtatgtaacctccctaagtacttactaacagggtacgctagctttcaggttgtttctctagttactaattaattacttcctggttagataga 27419054  T
Q  383 ttt--acatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgca 461  Q
    | |  | |||||||||||   |||||||    || ||||||||| | ||||||||||||||||||| ||||||||||||||    
T  27419055 tataaatatcaatattagaccatgtcacacatattagtgcctaaatcagggttatgcttcagaggaaacaaatcttacgca 27419135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 213 - 408
Target Start/End: Original strand, 24533987 - 24534181
Alignment:
Q  213 atttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcac 311  Q
    ||||||||| || |||||  | ||| |||||||| ||| ||||||||||  ||||||| || |||||  ||  |||| |||||| ||||| ||| || ||    
T  24533987 atttaagtcgtgaagtcatttttttccttaattactaactagttacttcgtgattttaacagatatggttc--tatttggtatgtcaccttcctaagtac 24534084  T
Q  312 ttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtcac 408  Q
    ||||||| ||||||| ||||| |||||||||||||| |||| || ||||||||||||| |||| ||||| |||| ||||||||||| | ||||||||    
T  24534085 ttacttttagggttcactcgctttcggcttgtttccgtagttacaaattaattacttcctgattagacagatttccatcaatattaagcaatgtcac 24534181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 84 - 606
Target Start/End: Original strand, 26291602 - 26292141
Alignment:
Q  84 ttcctcaaggtcctttcatctatgaatattaaaagcatatatcatactctctttc--gatagttctacaaacgagcagccctattagtgtctaccttatt 181  Q
    ||||| ||||| || |||||||||||| ||| ||| | ||| || |||||| |||  | ||||| |||||||   ||||||||| || ||||||||||      
T  26291602 ttcctaaaggttctctcatctatgaatcttagaagtacataacacactctccttctcggtagttttacaaactgacagccctatgagcgtctaccttacc 26291701  T
Q  182 gaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgca 280  Q
     | |||  || |||  ||||||| || ||||||||||||| || |||||| ||||| |||||||| ||| || ||||| |  ||| | |||| || |  |    
T  26291702 aaagtgtgaggagaatggagttattgggctgatttaagtcgtgaagtcacttgtttccttaattactaactaattactacatgatgtcagcaaatgttta 26291801  T
Q  281 tcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatg-ata-aga 378  Q
    ||||||||||||||| ||||||||| || ||||||| ||||||| |||| || || || ||||||  ||||| ||||| |||||||||| || | | | |    
T  26291802 tcaatattaggtatgtcacctccctaagtacttactatcagggtacgcttgcttttggtttgttttgctagttactaactaattacttcttggacatata 26291901  T
Q  379 caaattt----------acatcaatattaggtaatgtcaccttcataagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaacaatag 468  Q
     |||| |          | ||||||||||||||||||||| | | ||| ||||||| | |||||||||||||||| ||| |||||||||| || | | ||    
T  26291902 taaatatcaagataagaatatcaatattaggtaatgtcac-tacctaaatgcctaaatcagggttatgcttcagaagaggcaaatcttactca-ctacag 26291999  T
Q  469 taaaactagtag-----cataaagataattaaacaat-gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcct 562  Q
    ||||||||   |     |||||| |||| |||| ||  || ||| |||||||||| ||||||||||| || |||| || ||||||||||||| || ||||    
T  26292000 taaaactaaatgacgaacataaa-ataactaaataaacgaatttgaattaaataa-ttatctaacaaacaaaataaaggttcatcttagaactctggcct 26292097  T
Q  563 aaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||    
T  26292098 aaaaatatttagttactcatggtaactaaagacaaattacaaaa 26292141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 337 - 606
Target Start/End: Complemental strand, 8502445 - 8502173
Alignment:
Q  337 ggcttgtttccctagtaactaattaattacttcatgataagacaaatttacatcaatattaggtaatgtcaccttcataagtgcctaagttag---ggtt 433  Q
    |||||||||||||||| |||||||| ||||||| | || |||||  | || | |||||||||||| ||||  || | ||||| |||| ||||    ||||    
T  8502445 ggcttgtttccctagttactaattacttacttcctaattagacagctataaaccaatattaggta-tgtcgtctccttaagtaccta-gttatcatggtt 8502348  T
Q  434 atgcttcagaggagacaaatcttacgcaacaatagtaaaactag-tagcat---aaagataattaaacaatgactttaaattaaataaattatctaacaa 529  Q
    |||||||||||||||||||||||||||| | ||||||||| ||  ||  ||   | | |||| | || || ||||||||||||||||||| ||| |||||    
T  8502347 atgcttcagaggagacaaatcttacgca-ctatagtaaaattaaataaaattcaagaaataactgaataaagactttaaattaaataaat-atccaacaa 8502250  T
Q  530 tcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
      ||||||||| ||||||||||||||||||||||| || |||||| ||  ||| ||| |||||||||||||||||||    
T  8502249 atagaatagaggttcatcttagaaccctagcctaacaagatttagctacccatggtaactaaagacaaattacaaaa 8502173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 517 - 606
Target Start/End: Complemental strand, 26652449 - 26652360
Alignment:
Q  517 aattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| ||||| || ||||||| || |||||| |||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||    
T  26652449 aattatccaacaaacaaaatagaggtttatcttaaaaccctagcctaaaaagatttagttactcatggtaactaaagacaaattacaaaa 26652360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 501 - 606
Target Start/End: Complemental strand, 41789867 - 41789763
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||||||||||||||||| ||| ||||| || ||| ||| |||||||||||||||||||||||||| ||||||||| | ||  |  |||||||||||||    
T  41789867 gactttaaattaaataaat-atccaacaaacaaaattgaggttcatcttagaaccctagcctaaaaaaatttagttactaatgatgactaaagacaaatt 41789769  T
Q  601 acaaaa 606  Q
    ||||||    
T  41789768 acaaaa 41789763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 504 - 606
Target Start/End: Original strand, 17181239 - 17181340
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattaca 603  Q
    |||||||||||||| ||||| ||||| || ||||||| | ||||||||||||||| |||||||| ||| ||||| |||| ||| |||||||||||||| |    
T  17181239 tttaaattaaataa-ttatccaacaaacaaaatagaggtacatcttagaaccctaacctaaaaagattgagttactcatggtaactaaagacaaattata 17181337  T
Q  604 aaa 606  Q
    |||    
T  17181338 aaa 17181340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 542 - 606
Target Start/End: Original strand, 20175180 - 20175244
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||||||||||||||||||||||||| |||||| ||  ||| ||| |||||||||||||||||||    
T  20175180 ttcatcttagaaccctagcctaaaaagatttagctacacatggtaactaaagacaaattacaaaa 20175244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 25348591 - 25348718
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    ||||||||||||||||||||||||| || ||||||||||  |||||   || |||  | |||||||| ||||||||||||| || |||||||||| ||      
T  25348591 tagttctacaaacgagcagccctatcagcgtctaccttaccgaggttcgaggagaatgaagttactgggctgatttaagtcgtgaagtcacctgtctttc 25348690  T
Q  241 taattattaa-tagttacttccagattt 267  Q
     ||||| ||| ||||||||||| |||||    
T  25348691 aaattactaactagttacttcctgattt 25348718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 45553720 - 45553825
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||||||||| | |||||||||| || | ||||||||   |||||  || |||  |||||||||| |||||||||||||||| |||||| ||||| ||    
T  45553720 tagttctacaaatgggcagccctatcagcgactaccttaccaaggtgtgaggagaatggagttactgtgctgatttaagtcatgaagtcacttgtttcct 45553819  T
Q  241 taatta 246  Q
    ||||||    
T  45553820 taatta 45553825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 606
Target Start/End: Complemental strand, 45621050 - 45620946
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||||||||||||||| ||||| |||||  | | ||||| |||||||||||||||||||||||||| |||| ||||   ||  || ||||| |||||||    
T  45621050 gactttaaattaaataa-ttatccaacaaataaattagaggttcatcttagaaccctagcctaaaaaaatttggttacctatgttaactaaaaacaaatt 45620952  T
Q  601 acaaaa 606  Q
    ||||||    
T  45620951 acaaaa 45620946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 606
Target Start/End: Original strand, 27419214 - 27419282
Alignment:
Q  538 gagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||| |||||||||||||||||| |||||||||||||||||  ||| ||| ||||  |||||||||||||    
T  27419214 gaggttcatcttagaaccctaggctaaaaatatttagttacccatggtaactaataacaaattacaaaa 27419282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 604
Target Start/End: Original strand, 17891007 - 17891070
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaa-gacaaattacaa 604  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||| ||||| ||| ||||||||    
T  17891007 ttcatcttagaaccccagcctaaaaatatttagttactcatggtaactaaacgactaattacaa 17891070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 602
Target Start/End: Complemental strand, 27908232 - 27908167
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| |||||||||||||||    
T  27908232 agaggttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaagacaaattac 27908167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 604
Target Start/End: Complemental strand, 30682985 - 30682896
Alignment:
Q  515 taaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaa 604  Q
    ||||| ||| ||||| || ||||||  || |||||| ||| ||||||||||||  |||||||| |||| ||| |||||||||||||||||    
T  30682985 taaataatccaacaaacaaaatagaagttaatcttaaaactctagcctaaaaaggtttagttactcatggtaactaaagacaaattacaa 30682896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 41789967 - 41789894
Alignment:
Q  390 caatattaggtaatgtcaccttcataagtgcctaagtta---gggttatgcttcagaggagacaaatcttacgcaa 462  Q
    |||||||||||| |||||||||| |||||||||| ||||   |||||||||| || ||||||||||||||||||||    
T  41789967 caatattaggta-tgtcaccttcctaagtgccta-gttatcagggttatgctccataggagacaaatcttacgcaa 41789894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 41790043 - 41789974
Alignment:
Q  200 agttactgagctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagatttt 268  Q
    |||||||||||||| |||||||||| |||||| |||||  ||||||| ||| ||||||||||| ||||||    
T  41790043 agttactgagctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatttt 41789974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 34368684 - 34368756
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| || |||||||||  ||||||||||||  |||||||| |||| ||| ||||| |||||||||||||    
T  34368684 aatagaggtttatcttagaattctagcctaaaaaggtttagttactcatggtaactaaaaacaaattacaaaa 34368756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 577
Target Start/End: Complemental strand, 32439426 - 32439383
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||    
T  32439426 aatagaggttcatcttagaaccctggcctaaaaagatttagtta 32439383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 608
Target Start/End: Original strand, 31427148 - 31427186
Alignment:
Q  570 tttagttaatcatagtatctaaagacaaattacaaaata 608  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  31427148 tttagttactcatagtaactaaagacaaattacaaaata 31427186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 383
Target Start/End: Complemental strand, 45621358 - 45621180
Alignment:
Q  209 gctgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttcca----gattttagcacatatgcatcaatattaggtatgccacctcc 303  Q
    ||||||||||||| || ||| || ||||| |||||||| ||| ||||||||| |     ||||| |||| || |||||||||||||| | || |||||||    
T  45621358 gctgatttaagtcgtgaagtaacttgtttccttaattactaactagttacttactacatgatttcagcagatttgcatcaatattagttgtgtcacctcc 45621259  T
Q  304 ctgagcacttactttcagggttcgctcgcattcggcttgtttccctagtaactaattaattacttcatgataagacaaat 383  Q
     | || ||||||| | ||||| | ||||  ||||| |||| || ||||| ||||| ||||||||||||| | ||||||||    
T  45621258 -taagtacttactattagggtacactcgttttcggtttgtatcgctagttactaactaattacttcatggttagacaaat 45621180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 8502571 - 8502478
Alignment:
Q  211 tgatttaagtcatggagtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctcc 303  Q
    ||||||||||| || |||||| ||||||||| |||| ||| ||||||||||  |||||| | |  |||||| |||||||||||||| | |||||    
T  8502571 tgatttaagtcgtgaagtcacatgttttcttgattactaactagttacttcatgatttttgaaggtatgcaccaatattaggtatgtcgcctcc 8502478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 577
Target Start/End: Complemental strand, 23010878 - 23010807
Alignment:
Q  505 ttaaattaaataaattatctaacaa-tcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||||||||||| ||||| ||||| ||| ||||||| |||||||||||||||| ||||| |||||| ||||||    
T  23010878 ttaaattaaataa-ttatccaacaaatca-aatagaggttcatcttagaaccctggcctataaatatctagtta 23010807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 603
Target Start/End: Original strand, 27870617 - 27870686
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattaca 603  Q
    ||||||| |||||||||||| ||||| |||||||  |||||||| | || ||| | ||||||||||||||    
T  27870617 aatagaggttcatcttagaatcctaggctaaaaacgtttagttactaatggtaaccaaagacaaattaca 27870686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 12556789 - 12556737
Alignment:
Q  616 agactccttctttgaagctcctagtgttttccttcctcttgaaccgcttcatt 668  Q
    |||||||| | ||||||||||||| | || |||| ||||||||||||||||||    
T  12556789 agactcctcccttgaagctcctagcgcttgcctttctcttgaaccgcttcatt 12556737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 542 - 606
Target Start/End: Complemental strand, 12556892 - 12556828
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||||||||||| | ||||| |   |||||||| |||| ||| |||||||||||||||||||    
T  12556892 ttcatcttagaaccccaccctaatagggtttagttactcatggtaactaaagacaaattacaaaa 12556828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 498 - 562
Target Start/End: Original strand, 18552540 - 18552603
Alignment:
Q  498 aatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcct 562  Q
    |||||| ||||||||||||| ||||| |||||    ||||||| |||||||||||||||||||||    
T  18552540 aatgacattaaattaaataa-ttatccaacaaaacaaatagaggttcatcttagaaccctagcct 18552603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 612 - 664
Target Start/End: Original strand, 22623114 - 22623166
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgctt 664  Q
    ||||| |||||| ||||||||||||||| | || |||||||||| ||||||||    
T  22623114 agagaaactcctcctttgaagctcctagggcttgccttcctcttaaaccgctt 22623166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 25937926 - 25937997
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| ||||||||| ||||||| ||||| |   |||||||| |||| ||| |||||||||||||||||||    
T  25937926 aatagaggttcatcttataaccctaccctaatagg-tttagttactcatggtaactaaagacaaattacaaaa 25937997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 426 - 606
Target Start/End: Original strand, 3357385 - 3357567
Alignment:
Q  426 ttagggttatgcttcagaggagacaaatcttacgcaacaatagtaaaactag-tagcataa---agataattaaacaatgactttaaattaaataaatta 521  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||||| ||  ||||||||   | |||| | || || |||||||||||||||||||||    
T  3357385 ttagggttatgcttcagaggagacagatcttaccca-caatagtaaaattaaatagcataatcaaaataagtgaataaagactttaaattaaataaatta 3357483  T
Q  522 tctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    || ||||| || ||||||| |||||||||||| ||||||||||||| |||||||||  ||| ||| |||||||||||||||||||    
T  3357484 tcaaacaaccaaaatagaggttcatcttagaaacctagcctaaaaagatttagttacacat-gtaactaaagacaaattacaaaa 3357567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 137 - 606
Target Start/End: Original strand, 9726593 - 9727061
Alignment:
Q  137 tcgatagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgtt 236  Q
    |||||||||||||||||| |||||||||| || |||||||||||  |||||||||||||  ||||||  ||  |||| ||||||| || |||||| ||||    
T  9726593 tcgatagttctacaaacgggcagccctatcagcgtctaccttat--aggtgaaagaagaatggagttcgtggtctgagttaagtcgtgaagtcacatgtt 9726690  T
Q  237 ttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcatt 335  Q
    | |||||||| ||  |||||||| |   |||| |  | |||| |||||||||||| |||| ||||||||| || ||||| | |||||||  |||| | ||    
T  9726691 tccttaattactagctagttactac---atttcaatagatattcatcaatattagatatgtcacctccctaagtacttattatcagggta-gctcacttt 9726786  T
Q  336 cggcttgtttccctagtaactaattaattacttcatgataagacaaatttacat--caatattaggtaatgtcaccttcataagtgcctaagttagggtt 433  Q
    |   ||||||| ||| | | |||||||||||||| || | ||| | || || ||  ||||||||||   |||||| | ||||||||||||| | | ||||    
T  9726787 caatttgtttcgctaatgagtaattaattacttcctggttagagagatataaatatcaatattagggtctgtcac-tacataagtgcctaaatcaaggtt 9726885  T
Q  434 atgcttcagaggagacaaatcttacgcaacaatagtaaaactag-tagc--ata-aagataattaaacaat-gactttaaattaaataaattatctaaca 528  Q
    |||||||||||||||||||||||| ||   |  ||||||||||  ||||  ||| || |||| | || ||  ||||||||||||||||| ||| | ||||    
T  9726886 atgcttcagaggagacaaatcttatgcgttac-agtaaaactaaatagcgaatagaaaataactgaataaaagactttaaattaaataa-ttacccaaca 9726983  T
Q  529 atcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    | || ||||||| |||||||||||||||||   |||||| ||||||||| |||| ||| ||||| |||||||||||||    
T  9726984 aacaaaatagaggttcatcttagaaccctaagttaaaaagatttagttactcatggtagctaaaaacaaattacaaaa 9727061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 428 - 606
Target Start/End: Original strand, 32759265 - 32759445
Alignment:
Q  428 agggttatgcttcagaggagacaaatcttacgcaacaatagtaaaa-ctagtagcat---aaagataattaaacaatgactttaaattaaataaattatc 523  Q
    |||||||||||||||| ||||||| || |||||| ||||||||||| | | ||| ||   ||| |||| |||| || |||||||||||||||||| ||||    
T  32759265 agggttatgcttcagatgagacaa-tcatacgca-caatagtaaaatcaaataggattcaaaaaataactaaataaagactttaaattaaataaaatatc 32759362  T
Q  524 taacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
     |||||  ||||||||| ||||||||||||||||| |||||||| ||||| |||  ||  ||| |||||||||||||||||||    
T  32759363 caacaaatagaatagaggttcatcttagaaccctatcctaaaaagatttacttacacacggtaactaaagacaaattacaaaa 32759445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 501 - 606
Target Start/End: Original strand, 10504481 - 10504586
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    |||||||||||||||||| |||| ||||| |||||||||| ||||||||| ||| |||||||||||| |||||||||  ||| | | ||||||| |||||    
T  10504481 gactttaaattaaataaaatatccaacaaacagaatagaggttcatcttataacgctagcctaaaaagatttagttacacatggcaactaaagataaatt 10504580  T
Q  601 acaaaa 606  Q
    ||||||    
T  10504581 acaaaa 10504586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 501 - 606
Target Start/End: Original strand, 14726452 - 14726556
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    ||||||||||||||||| ||||| |||||  | ||||||| ||||||||||||| |||||||||||  ||||||||| |||| ||| ||||| |||||||    
T  14726452 gactttaaattaaataa-ttatccaacaaataaaatagaggttcatcttagaacactagcctaaaaggatttagttactcatggtaactaaaaacaaatt 14726550  T
Q  601 acaaaa 606  Q
    ||||||    
T  14726551 acaaaa 14726556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 606
Target Start/End: Original strand, 9386971 - 9387062
Alignment:
Q  515 taaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||| ||| ||||| || ||||||| ||||||||||||||||| ||||||||  |||||||| |||| ||| ||||||||| |||||||||    
T  9386971 taaataatccaacaaacaaaatagaggttcatcttagaaccctaacctaaaaaagtttagttactcattgtaactaaagacatattacaaaa 9387062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 516 - 606
Target Start/End: Original strand, 34479439 - 34479529
Alignment:
Q  516 aaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||| ||| ||||| || ||||||||||||||||||||||| | ||||||||  |||| ||| |||| ||| |||||||||||||||||||    
T  34479439 aaataatccaacaaacaaaatagagattcatcttagaacccaaccctaaaaaggtttatttactcatggtaactaaagacaaattacaaaa 34479529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 2587642 - 2587714
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||| |||||||||||||||||||||||| | |||||||||  ||| ||| ||||| |||||||||||||    
T  2587642 aatagaggttcatcttagaaccctagcctaaacagatttagttacccatggtaactaaaaacaaattacaaaa 2587714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 612 - 669
Target Start/End: Original strand, 10821648 - 10821705
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttcattc 669  Q
    |||||||||||| | || |||||| |||||||| ||||||||||||||||||||||||    
T  10821648 agagagactcctcccttaaagctcttagtgtttgccttcctcttgaaccgcttcattc 10821705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 461
Target Start/End: Complemental strand, 23645017 - 23644970
Alignment:
Q  414 taagtgcctaagttagggttatgcttcagaggagacaaatcttacgca 461  Q
    |||||||||||  ||||||||||||||||| |||||||||||||||||    
T  23645017 taagtgcctaaactagggttatgcttcagatgagacaaatcttacgca 23644970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 602
Target Start/End: Complemental strand, 17822818 - 17822751
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||||  | ||||| ||||| |||||||||    
T  17822818 aatagaggttcatcttagaactctaacctaaaaatatttagttacac-tagtaactaaaaacaaattac 17822751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 601
Target Start/End: Complemental strand, 21846484 - 21846420
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatta 601  Q
    |||||| ||||||||||| ||| ||||||||||||||||||  ||| ||| ||||| ||||||||    
T  21846484 agagatccatcttagaactctaacctaaaaatatttagttacacatggtaactaaaaacaaatta 21846420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 461
Target Start/End: Original strand, 14726289 - 14726336
Alignment:
Q  414 taagtgcctaagttagggttatgcttcagaggagacaaatcttacgca 461  Q
    ||||||||||  | ||||||||||||||||||||| ||||||||||||    
T  14726289 taagtgcctatatcagggttatgcttcagaggagaaaaatcttacgca 14726336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 577
Target Start/End: Complemental strand, 21687941 - 21687898
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||    
T  21687941 aatagaggttcatcttagaaccctagcctataaatatctagtta 21687898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 374
Target Start/End: Original strand, 14726087 - 14726234
Alignment:
Q  226 agtcacctgttttcttaattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggt 324  Q
    |||||| ||||| |||||||| ||| || ||||| || ||||| |||| || | ||||||||||||||||| ||||| ||| || ||||||| ||| |||    
T  14726087 agtcacttgtttccttaattactaactacttactacctgatttcagcagatgttcatcaatattaggtatgtcacctgcctaagtacttactatcaaggt 14726186  T
Q  325 tcgctcgcattcggcttgtttccctagtaactaattaattacttcatgat 374  Q
     | ||||| || |  || |||| ||||| ||||| |||||||||| ||||    
T  14726187 acactcgcttttg--ttttttcgctagttactaactaattacttcctgat 14726234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 9291274 - 9291227
Alignment:
Q  501 gactttaaattaaataaattatctaacaatcagaatagagattcatctt 549  Q
    ||||||||||||||| ||||||| ||||| |||||||||| ||||||||    
T  9291274 gactttaaattaaat-aattatccaacaaacagaatagaggttcatctt 9291227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 414 - 462
Target Start/End: Complemental strand, 9291365 - 9291317
Alignment:
Q  414 taagtgcctaagttagggttatgcttcagaggagacaaatcttacgcaa 462  Q
    ||||||||||| | ||||||||||||||  |||||||||| ||||||||    
T  9291365 taagtgcctaaatcagggttatgcttcaatggagacaaattttacgcaa 9291317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 9291527 - 9291479
Alignment:
Q  198 ggagttactgagctgatttaagtcatggagtcacctgttttcttaatta 246  Q
    ||||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  9291527 ggagttattgggctgatttaagtcatgaagtcacttgtttccttaatta 9291479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 473
Target Start/End: Original strand, 10504410 - 10504449
Alignment:
Q  433 tatgcttcagaggagacaaatcttacgcaacaatagtaaaa 473  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  10504410 tatgcttcagaggagacaaatcttacgc-acgatagtaaaa 10504449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 537 - 605
Target Start/End: Original strand, 14722973 - 14723041
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaa 605  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| | ||| ||||||||||||    
T  14722973 agaggttcatcttagaactctaacctaaaaaaatttagttacacatggtaacaaaaaacaaattacaaa 14723041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 602
Target Start/End: Complemental strand, 15613377 - 15613309
Alignment:
Q  534 aatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||| |||||| |||||||| | |||||||| ||||||| | ||||  || |||||||||||||||    
T  15613377 aatagaggttcatcatagaaccccatcctaaaaagatttagtaactcatgataactaaagacaaattac 15613309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 542 - 602
Target Start/End: Complemental strand, 27123608 - 27123548
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    ||||||||||||| | | |||||||| |||||||||  ||||||| ||||| |||||||||    
T  27123608 ttcatcttagaactccaacctaaaaagatttagttacacatagtaactaaaaacaaattac 27123548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 629 - 665
Target Start/End: Original strand, 30355698 - 30355734
Alignment:
Q  629 gaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    ||||||||||||| || ||||||||||||||||||||    
T  30355698 gaagctcctagtgcttgccttcctcttgaaccgcttc 30355734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 612 - 668
Target Start/End: Original strand, 34479564 - 34479620
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttcatt 668  Q
    |||||||||||| | ||||||||||||||| ||  | |||||||||||| |||||||    
T  34479564 agagagactcctcccttgaagctcctagtgcttgtcatcctcttgaaccacttcatt 34479620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 141 - 372
Target Start/End: Original strand, 4462 - 4694
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctaccttattgaggtgaaagaagagcggagttactgagctgatttaagtcatggagtcacctgttttct 240  Q
    |||||||||| ||| |||||||||||||  ||||||||||  |||||  || |||  | ||||| || |||||||||||||||| |||||| ||||| ||    
T  4462 tagttctacacacgggcagccctattagcatctaccttatcaaggtgcgaggagaatgaagttattgggctgatttaagtcatgaagtcacttgtttcct 4561  T
Q  241 taattattaa-tagttacttccagattttagcacatatgcatcaatattaggtatgccacctccctgagcacttactttcagggttcgctcgcattcggc 339  Q
    |||||| ||| |||||||| || | ||| | ||  | | ||| |||||||||||||  |||||||| || |||| || ||| |||  ||| |  |||||     
T  4562 taattactaactagttactacctgctttcaacagttgttcatgaatattaggtatgatacctccctaagtactttctatcaaggtatgcttgttttcggt 4661  T
Q  340 ttgtttccctagtaactaattaattacttcatg 372  Q
    ||||||| ||||| |||||||||||||||||||    
T  4662 ttgtttcgctagttactaattaattacttcatg 4694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 504 - 600
Target Start/End: Complemental strand, 10872 - 10776
Alignment:
Q  504 tttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaatt 600  Q
    |||||||||||| || |||| ||||| || ||||||| ||||||||||||||||| || ||||| ||||||||| |||| ||| |||||||||||||    
T  10872 tttaaattaaattaaatatccaacaaacaaaatagaggttcatcttagaaccctatccaaaaaagatttagttactcatggtaactaaagacaaatt 10776  T

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Target: scaffold0086 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 498 - 606
Target Start/End: Original strand, 8697 - 8804
Alignment:
Q  498 aatgactttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaa 597  Q
    |||||||||| ||||||||| ||||| ||||| || ||||||| |||| ||||||||| ||| ||||||| ||||||||| ||||  || ||||||||||    
T  8697 aatgactttagattaaataa-ttatccaacaaacaaaatagaggttcaccttagaaccttagtctaaaaagatttagttactcatgataactaaagacaa 8795  T
Q  598 attacaaaa 606  Q
    |||||||||    
T  8796 attacaaaa 8804  T

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Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 516 - 606
Target Start/End: Original strand, 23333 - 23423
Alignment:
Q  516 aaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    |||| ||| ||||| || ||||||| ||||||||||||||||||||||||||   ||||| | |||| ||| |||||||||||||||||||    
T  23333 aaataatccaacaaacataatagaggttcatcttagaaccctagcctaaaaagggttagtcactcatggtaactaaagacaaattacaaaa 23423  T

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Target: scaffold0085; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 665
Target Start/End: Original strand, 23458 - 23511
Alignment:
Q  612 agagagactccttctttgaagctcctagtgttttccttcctcttgaaccgcttc 665  Q
    |||||||||| | | |||||||| |||||||||||||||||||| |||||||||    
T  23458 agagagactcatcccttgaagctactagtgttttccttcctcttaaaccgcttc 23511  T

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Target: scaffold0653 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 539 - 577
Target Start/End: Complemental strand, 54 - 16
Alignment:
Q  539 agattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  54 agattcatcttagaaccctagcttaaaaatatttagtta 16  T

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Target: scaffold0056 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 602
Target Start/End: Original strand, 22308 - 22371
Alignment:
Q  539 agattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||||||||||||||| ||| ||||||||||||||||||  ||| |||  |||| |||||||||    
T  22308 agattcatcttagaactctaacctaaaaatatttagttacacatggtaattaaaaacaaattac 22371  T

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Target: scaffold0056; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 53816 - 53881
Alignment:
Q  537 agagattcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattac 602  Q
    |||| ||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||| |||||||||    
T  53816 agaggttcatcttagaactctaacctaaaaagatttagttacacatggtaactaaaaacaaattac 53881  T

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Target: scaffold0128 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 101 - 63
Alignment:
Q  141 tagttctacaaacgagcagccctattagtgtctacctta 179  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  101 tagttctacaaacgggaagccctattagtgtctacctta 63  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 89362 - 89321
Alignment:
Q  137 tcgatagttctacaaacgagcagccctattagtgtctacctt 178  Q
    |||||||||| ||||||| |||||||||||| ||||||||||    
T  89362 tcgatagttccacaaacgggcagccctattactgtctacctt 89321  T

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Target: scaffold1156 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold1156
Description:

Target: scaffold1156; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 542 - 606
Target Start/End: Original strand, 589 - 653
Alignment:
Q  542 ttcatcttagaaccctagcctaaaaatatttagttaatcatagtatctaaagacaaattacaaaa 606  Q
    ||||||||||||| |||  ||||||| |||||||||  ||| ||| ||||| |||||||||||||    
T  589 ttcatcttagaactctaaactaaaaagatttagttacacatggtaactaaaaacaaattacaaaa 653  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 505 - 577
Target Start/End: Original strand, 40584 - 40655
Alignment:
Q  505 ttaaattaaataaattatctaacaatcagaatagagattcatcttagaaccctagcctaaaaatatttagtta 577  Q
    ||||||||||||| ||||| |||||  | ||||||| || |||||||||||||| |||| |||||| ||||||    
T  40584 ttaaattaaataa-ttatccaacaaaaaaaatagaggtttatcttagaaccctaacctataaatatctagtta 40655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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