View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0087-Insertion-4 (Length: 567)
Name: NF0087-Insertion-4
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087-Insertion-4 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 8 - 567
Target Start/End: Complemental strand, 42656676 - 42656116
Alignment:
| Q |
8 |
ctctggaatctgaattagtttactgttaaatttaatttcattgtgcatatgcatgcagtttttaccaaacaaattatgttcaggnnnnnnncaatgtcta |
107 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42656676 |
ctctgaaatctgaattagtttacttttaaatttaatttcattgtgcatatgcatgcagtttttaccaaacaaattatgttcaggtttttttcaatgtcta |
42656577 |
T |
|
| Q |
108 |
gcagacaaaagtgcaacaaagtgtttttcagacagcttttctagtgattaagaaaaattgaaataattaactctaatctaatactaagcaaaaagattca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42656576 |
gcagacaaaagtgcaacaaagtgtttttcaaacagcttttctagtgattaagaaaaattgaaataattaactctaatctaatactaagcaaaaagattca |
42656477 |
T |
|
| Q |
208 |
gtcacacagttaccttgaaacaagacatgtagccatgtacgtgttgtgttgactttccaccaatactaaactaagaaatggtcattttccatctaaaata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42656476 |
gtcacacagttaccttgaaacaagacatgtagccatgtacgtgttgtgttgactttccaccaatactaaactaagaaatggtcattttccatctaaaata |
42656377 |
T |
|
| Q |
308 |
taaaaaatatggtgatgccgttggcaatggaaagtttcacctcaaaactcttcttctaacgtgttctttaatcttatctatacataaattaattgaaaga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42656376 |
taaaaaatatggtgatgccgttggcaatggaaagtttcacctcaaaactcttcttctaacgtgttctttaaacttatctatacataaattaattgaaaga |
42656277 |
T |
|
| Q |
408 |
gttagaaatagaaacc-agtttatatattcaannnnnnnagtctgaaaaccaacaatagatataaatctttaactcttgataataatgtgcaaaccatgg |
506 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42656276 |
gttagaaatagaaaccaagtttatatattctatttttttagtctgaaaaccaataatagatacaaatctttaactctagataataatgtgcaaaccatgg |
42656177 |
T |
|
| Q |
507 |
ttaagtccataggatctttatcaatcacttaatctatggttaaggcataaaagacctgtga |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42656176 |
ttaagtccataggatctttatcaatcacttaatctatggttaaggcataaaagacctgtga |
42656116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 761 times since January 2019
Visitors: 1284