View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0087-Insertion-6 (Length: 537)
Name: NF0087-Insertion-6
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087-Insertion-6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Original strand, 7605567 - 7606083
Alignment:
| Q |
8 |
gaaataacggaaatcatgaggtggaaagaagaccatggggagagagaattcaattagttagcagaaagataaatgtccaagggtgataatgaattcgtcg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
7605567 |
gaaataacggaaatcatgaggtggaaagaaaaacatggggagagagaattcaattagttagcagaaagataaatgtccaagggcgataatgaatttgtcg |
7605666 |
T |
|
| Q |
108 |
cttctcgtacatgtattttgtcgttccataaagcattgtctcttgacctaagtcatgggttttaaaagaaactagagttttcaaatgagagatgctactt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605667 |
cttctcgtacatgtattttgtcgttccataaagcattgtctcttgacctaagtcatgagtttt-aaagaaactagagttttcaaatgagagatgctactt |
7605765 |
T |
|
| Q |
208 |
agtattacactaactttaatgaaaaaacatgttaattcccaaccagcggaattcaggcgcaatgggcggtggagtagttcattcaacttttaatgtttgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
7605766 |
agtattacactaactttaatgaaaaaacatgttaattcccaaccagcggaattcaggcgcaatggg------------tcattaaacttttaatgtttgt |
7605853 |
T |
|
| Q |
308 |
gccacatccttcgttttgattttgtttctcgctacaaagtgtttctcttttcaaatagaaaccctaattagatagttgtcatcagagactcttgttgata |
407 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7605854 |
gccacatacttcgttttgattttgtttctcgctacgaaggtattctcttttcaaatagaaaccctaattagatagttgtcatcagagtctcttgttgata |
7605953 |
T |
|
| Q |
408 |
aattatgatatgatttttatcacatgatcctgattgtgtctttagacttatttgaatatggtctagggcatctcgatagcataatatgcggtagcctgct |
507 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||| |
|
|
| T |
7605954 |
aattaggatatgatttttatcacatgatcctgattgtgtctttagacttatttgaatatggtctaggacatctcgataacataatatgtggtagcttgct |
7606053 |
T |
|
| Q |
508 |
atcttgatgcaaactcattcttctgttgga |
537 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
7606054 |
atcttgatgcaaactcattcttttgttgga |
7606083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 33904777 - 33904879
Alignment:
| Q |
42 |
atggggagagagaattcaattagttagcagaaagataaatgtccaagggtgataatgaattcgtcgcttctcgtacatgtattttgtcgttccataaagc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
33904777 |
atggggagagagaattcaattagttagcagaaagataaatatccaagggtggtaatgaattcgtcgcttctcgtgcatgtattttgtcgctccataaagc |
33904876 |
T |
|
| Q |
142 |
att |
144 |
Q |
| |
|
||| |
|
|
| T |
33904877 |
att |
33904879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 33904941 - 33905070
Alignment:
| Q |
15 |
cggaaatcatgaggtggaaagaagaccatggggagagagaattcaattagttagcagaaagataaatgtccaagggtgataatgaattcgtcgcttctcg |
114 |
Q |
| |
|
||||||||| | ||||||||| | | ||||||||| ||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
33904941 |
cggaaatcaagcggtggaaaggaaaacatggggagtgagtattcaattagttagcagaaagataaatattcaagggtgataatgaattcgtcgcttctca |
33905040 |
T |
|
| Q |
115 |
tacatgtattttgtcgttccataaagcatt |
144 |
Q |
| |
|
| | |||||||||||| |||||||| |||| |
|
|
| T |
33905041 |
tgcgtgtattttgtcgctccataaaacatt |
33905070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 50470339 - 50470465
Alignment:
| Q |
17 |
gaaatcatgaggtggaaagaagaccatggggagagagaattcaattagttagcagaaagataaatgtccaagggtgataatgaattcgtcgcttctcgta |
116 |
Q |
| |
|
||||||||| | ||||||| | | ||||||||||||||||||||||||||| | |||| ||||| ||||| | || |||| ||||||||||||||| |
|
|
| T |
50470339 |
gaaatcatgggatggaaaggaaaacatggggagagagaattcaattagttaacggaaatataaacatccaaagatggtaatagtttcgtcgcttctcgtg |
50470438 |
T |
|
| Q |
117 |
catgtattttgtcgttccataaagcatt |
144 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
50470439 |
catgt-ttttgtcgttccataaagcatt |
50470465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 19591161 - 19591264
Alignment:
| Q |
41 |
catggggagagagaattcaattagttagcagaaagataaatgtccaagggtgataatgaattcgtcgcttctcgtacatgtattttgtcgttccataaag |
140 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||| ||| |||||| |||| ||||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
19591161 |
catggggagagagaatccaattagttaatgcatagataaagatcctagggtggtaattgattcgtcaaatctcgtacatgtatactgtcgtaccataaag |
19591260 |
T |
|
| Q |
141 |
catt |
144 |
Q |
| |
|
|||| |
|
|
| T |
19591261 |
catt |
19591264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1111 times since January 2019
Visitors: 1291