View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0087-Insertion-8 (Length: 452)
Name: NF0087-Insertion-8
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 452
Target Start/End: Complemental strand, 50993843 - 50993393
Alignment:
| Q |
8 |
gccttctccttgtaagccactgaggagtggaataaactgcttctctgatactgaaa------ttggaacaggtgaaagaacattatcatccttctccaaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
50993843 |
gccttctccttgtaagccactgaggagtggaataaactgcttctctgatactgatactgatattggaacaggtgaaagaacattatcatccttctccaaa |
50993744 |
T |
|
| Q |
102 |
tcagaaaacaactcatcttcaccactcactttcctgttactatcataaatataaacctcctcatcaccaaccacctctgaaaccggtgcagccacagcca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50993743 |
tcagaaaacaactcatcttcaccactcactttcctgttactatcataaatataaacctcctcatcaccaaccacctctgaaaccggtgcggccacagcca |
50993644 |
T |
|
| Q |
202 |
cgggaacagcatttgcagccaccgccgaatcaacaatattgtaaacctctatatcaaaacaaccaggcaatttcctctctctcctcaactcaacgttcat |
301 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50993643 |
cgggaacagcatttgcagccaccgccgaatcaagaatattgtaaacctctatatcaaaacaaccaggcaatttcctctctctcctcaactcaacgttcat |
50993544 |
T |
|
| Q |
302 |
caaccaaaacgactcagtttcatcactcacctgagactcccactccttaatcttcttataatctgcggtgagattgccccatcgcttcttacactgaatc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50993543 |
caaccaaaacgactcagtttcatcactcacctgagactcccactccttaatcttcttataatctgcggtgagattgccccatcgcttcttacactgaatc |
50993444 |
T |
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| Q |
402 |
ggtgtccggttcacaccatgcttctcacagtacgaagagaccaacgtccac |
452 |
Q |
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| T |
50993443 |
ggtgtccggttcacaccatgcttctcacagtacgaagagaccaacgtccac |
50993393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 242 - 447
Target Start/End: Original strand, 6526880 - 6527085
Alignment:
| Q |
242 |
gtaaacctctatatcaaaacaaccaggcaatttcctctctctcctcaactcaacgttcatcaaccaaaacgactcagtttcatcactcacctgagactcc |
341 |
Q |
| |
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||||||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||| |||| |
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| T |
6526880 |
gtaaacctccttatcaaaatacccaggcaatttcctctctctcctcaaatcattcctcatcaaccaaaacgactccgtttcatctctcacctgactctcc |
6526979 |
T |
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| Q |
342 |
cactccttaatcttcttataatctgcggtgagattgccccatcgcttcttacactgaatcggtgtccggttcacaccatgcttctcacagtacgaagaga |
441 |
Q |
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|||||||| ||||||||||||||| ||| ||| |||| ||| |||||| ||||||||||||| |||||||||||| || |||| ||| |||||||| | |
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| T |
6526980 |
cactcctttatcttcttataatctccggcgaggttgctccaccgcttcctacactgaatcggaccccggttcacaccgtgtttcttacaatacgaagaaa |
6527079 |
T |
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| Q |
442 |
ccaacg |
447 |
Q |
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|||||| |
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| T |
6527080 |
ccaacg |
6527085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 6526692 - 6526771
Alignment:
| Q |
87 |
tcatccttctccaaatcagaaaacaactcatcttcaccactcactttcctgttactatcataaatataaacctcctcatc |
166 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
6526692 |
tcatccttctcaaaatcagaaaacaacccatcttcaccactcactttcctattactatcataaatatgaacctcctcatc |
6526771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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