View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0087-Insertion-9 (Length: 448)

Name: NF0087-Insertion-9
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0087-Insertion-9
NF0087-Insertion-9
[»] chr4 (4 HSPs)
chr4 (19-363)||(48373414-48373753)
chr4 (358-448)||(48373264-48373362)
chr4 (253-346)||(36866895-36866988)
chr4 (261-348)||(4698673-4698760)
[»] chr5 (2 HSPs)
chr5 (252-345)||(8235418-8235511)
chr5 (253-284)||(32284556-32284587)
[»] chr8 (2 HSPs)
chr8 (253-349)||(6354689-6354785)
chr8 (253-313)||(8701179-8701238)
[»] chr3 (1 HSPs)
chr3 (261-348)||(28406517-28406604)
[»] chr1 (2 HSPs)
chr1 (267-354)||(34146860-34146947)
chr1 (253-350)||(15285478-15285575)
[»] chr6 (1 HSPs)
chr6 (253-367)||(5483903-5484017)
[»] chr2 (4 HSPs)
chr2 (261-346)||(12486005-12486090)
chr2 (300-353)||(27182081-27182134)
chr2 (300-353)||(27831623-27831676)
chr2 (257-345)||(9152425-9152513)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 48373753 - 48373414
Alignment:
Q  19 ggataattccactatgcggtgtactcattagggttagcagcaaaatatattttcttttacgtgtttgtctttttcgagaaagattagatgtctgttaatt 118  Q
    ||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48373753 ggataattctactatgcggtgtactcatcagagttagcagtaaaatatattttcttttacgtgtttgtctttttcgtgaaagattagatgtctgttaatt 48373654  T
Q  119 gcactagtgcgagagattgctctaactgttaatcatttatgaaattataaaatttgttgttgaattgagtgaagaaagtataatgaaacctaaacaccta 218  Q
    | |||||||| ||||||| ||||||||||| ||||||||||||||||  ||||||||||||||||| ||||||   ||||||||||||||||||||||||    
T  48373653 gtactagtgcaagagattactctaactgttgatcatttatgaaatta--aaatttgttgttgaatttagtgaa---agtataatgaaacctaaacaccta 48373559  T
Q  219 aataaaataataatcgaatttaattgatacactcatttattaaataattgatgtatctgatttatattctagattaagtatataaattattcaattaacc 318  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  48373558 aataaaataatactcgaatttaattgatacactcctttattaaataattgatgtatctgatttatattctagattaagtacataaattattcaatgaacc 48373459  T
Q  319 tcataaatcaattgtttcttgtaaataggatcagaaaaagtacat 363  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||    
T  48373458 tcaaaaatcaattgtttcttgtaaataggatcagaagaagtacat 48373414  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 448
Target Start/End: Complemental strand, 48373362 - 48373264
Alignment:
Q  358 gtacataattggatatgtatatgttagaatgaatacaaatgggtcaaact--------ttgaaccaaggtctctttgaccaagcatttattcctggcag 448  Q
    |||| |||||||||||| || ||||| ||||||||||||||||||| |||        ||| |||||||||| ||||||||||||||||||||||||||    
T  48373362 gtacttaattggatatgaatgtgttaaaatgaatacaaatgggtcagactactagtttttggaccaaggtctgtttgaccaagcatttattcctggcag 48373264  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 36866895 - 36866988
Alignment:
Q  253 atttattaaataattgatgtatctgatttatattctagattaagtatataaattattcaattaacctcataaatcaattgtttcttgtaaatag 346  Q
    ||||||| |||||||||||||| |  | |||||||||||  ||||| |||||||||||||||||| | | |||| |||||||| || |||||||    
T  36866895 atttattgaataattgatgtattttgtctatattctagaccaagtacataaattattcaattaacttaaaaaattaattgtttattctaaatag 36866988  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 348
Target Start/End: Original strand, 4698673 - 4698760
Alignment:
Q  261 aataattgatgtatctgatttatattctagattaagtatataaattattcaattaacctcataaatcaattgtttcttgtaaatagga 348  Q
    ||||||| ||||||||| |||| ||||||||  |  || ||||||||||||||  | || | ||||||||||||| ||||||||||||    
T  4698673 aataatttatgtatctggtttagattctagaccatatacataaattattcaatgtatctaaaaaatcaattgtttattgtaaatagga 4698760  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 8235418 - 8235511
Alignment:
Q  252 catttattaaataattgatgtatctgatttatattctagattaagtatataaattattcaattaacctcataaatcaattgtttcttgtaaata 345  Q
    ||||||||| |||| |||||||| ||||||||||| ||||  || ||||| ||||||||||| || || | ||||||||| |||||| ||||||    
T  8235418 catttattatataaatgatgtatttgatttatattatagaccaaatatattaattattcaataaatctaaaaaatcaattttttcttataaata 8235511  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 284
Target Start/End: Complemental strand, 32284587 - 32284556
Alignment:
Q  253 atttattaaataattgatgtatctgatttata 284  Q
    ||||||||||||||||||||||||||||||||    
T  32284587 atttattaaataattgatgtatctgatttata 32284556  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 349
Target Start/End: Original strand, 6354689 - 6354785
Alignment:
Q  253 atttattaaataattgatgtatctgatttatattctagattaagtatataaattattcaattaacctcataaatcaattgtttcttgtaaataggat 349  Q
    ||||||| ||||||| |||||| |||| ||||||||||||  | || |||||||||||||| || || | |||| |||| |||||| ||||||||||    
T  6354689 atttattgaataattaatgtatatgatatatattctagatcgaatacataaattattcaatgaatctaaaaaattaattatttcttataaataggat 6354785  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 8701238 - 8701179
Alignment:
Q  253 atttattaaataattgatgtatctgatttatattctagattaagtatataaattattcaat 313  Q
    |||||||||||||||||||||| ||||| ||| | ||||| || ||||| |||||||||||    
T  8701238 atttattaaataattgatgtatttgattgataatatagatcaa-tatatcaattattcaat 8701179  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 348
Target Start/End: Original strand, 28406517 - 28406604
Alignment:
Q  261 aataattgatgtatctgatttatattctagattaagtatataaattattcaattaacctcataaatcaattgtttcttgtaaatagga 348  Q
    ||||||| |||||| || | |||||||||||    ||| |||||||||||||| ||||| | || |||||||||||||||||||||||    
T  28406517 aataattaatgtatttggtctatattctagaccgggtacataaattattcaatgaacctaaaaagtcaattgtttcttgtaaatagga 28406604  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 354
Target Start/End: Original strand, 34146860 - 34146947
Alignment:
Q  267 tgatgtatctgatttatattctagattaagtatataaattattcaattaacctcataaatcaattgtttcttgtaaataggatcagaa 354  Q
    |||||||| |||| |||||||||||| || || || ||||||||||| || |  | ||||||||| |||||| |||||||||||||||    
T  34146860 tgatgtatttgatatatattctagatcaaatacattaattattcaatgaatcaaaaaaatcaattttttcttataaataggatcagaa 34146947  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 15285478 - 15285575
Alignment:
Q  253 atttattaaataattgatgtatctgatttatattctagattaagtatataaattattcaattaacctcataaatcaattgtttcttgtaaataggatc 350  Q
    ||||||| |||||||||||||||||||  |||||| |||| || || || ||||||||||| || || | ||||||| ||| |||| |||||| ||||    
T  15285478 atttattgaataattgatgtatctgatccatattcaagatcaaatacatcaattattcaatcaatctaaaaaatcaagtgtctcttataaatatgatc 15285575  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 367
Target Start/End: Original strand, 5483903 - 5484017
Alignment:
Q  253 atttattaaataattgatgtatctgatttatattctagattaagtatataaattattcaattaacctcataaatcaattgtttcttgtaaataggatcag 352  Q
    |||||||||||||||||||||| |  | |||||| |||| ||| || || ||||||||||  || || | || |||||||||||||| |||||||| |||    
T  5483903 atttattaaataattgatgtattttgtctatattttagactaaatacattaattattcaacgaatctaaaaagtcaattgtttcttgcaaataggagcag 5484002  T
Q  353 aaaaagtacataatt 367  Q
    |  ||||| ||||||    
T  5484003 aggaagtatataatt 5484017  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 12486090 - 12486005
Alignment:
Q  261 aataattgatgtatctgatttatattctagattaagtatataaattattcaattaacctcataaatcaattgtttcttgtaaatag 346  Q
    |||||||||||||| || | ||||||||||    |||  |||||||||||||| ||||| | || |||||| ||||||||||||||    
T  12486090 aataattgatgtatttggtctatattctaggccgagtccataaattattcaatgaacctaaaaagtcaattctttcttgtaaatag 12486005  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 27182134 - 27182081
Alignment:
Q  300 ataaattattcaattaacctcataaatcaattgtttcttgtaaataggatcaga 353  Q
    ||||||||||||||  | || | ||||||||||||||||||||||| |||||||    
T  27182134 ataaattattcaatgtatctgaaaaatcaattgtttcttgtaaataagatcaga 27182081  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 27831676 - 27831623
Alignment:
Q  300 ataaattattcaattaacctcataaatcaattgtttcttgtaaataggatcaga 353  Q
    ||||||||||||||  | || | ||||||||||||||||||||||| |||||||    
T  27831676 ataaattattcaatgtatctgaaaaatcaattgtttcttgtaaataagatcaga 27831623  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 9152425 - 9152513
Alignment:
Q  257 attaaataattgatgtatctgatttatattctagattaagtatataaattattcaattaacctcataaatcaattgtttcttgtaaata 345  Q
    |||||||||||||||||| || | |||||| |||| ||  || || ||||| ||||| || || | || ||||||||||||||||||||    
T  9152425 attaaataattgatgtatttggtctatattttagactagatacatcaattactcaatgaatctaaaaagtcaattgtttcttgtaaata 9152513  T

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