View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0087_low_1 (Length: 507)
Name: NF0087_low_1
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 77 - 468
Target Start/End: Original strand, 31869639 - 31870031
Alignment:
| Q |
77 |
cacagaccagcaagatatttgagtgttaataattctcaaccacaaacatcgacttcaaaaaataannnnnnncgatgttttaaatggcagtgtaaaggtt |
176 |
Q |
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| T |
31869639 |
cacagaccagcaagatatttgagtgttaataattctcaaccacaaacatcgacttcaaaaaataatttttttcgatgttttaaatggcagtgtaaaggtt |
31869738 |
T |
|
| Q |
177 |
acactacatttgccagcagacctttagattgcatcatgtaatgcagctgcaaaggttttaaacagaagtctgtgactgagatctgggcagcaacatcagg |
276 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31869739 |
acactacatttgccagcagacttttagattgcatcatgtaatgcagctgcaaaggttttaaacagaagtttgtgactgagatctgggcagcaacatcagg |
31869838 |
T |
|
| Q |
277 |
gtttttgttgttactgtgactataattgagatagcatcggtcacatttgagtgcaattctctgttatatcaaggaccatggcgcgaccacaatttaaaac |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869839 |
gtttttgttgttactgtgactataattgagatagcatcggtcgcatttgagtgcaattctctgttatatcaaggaccatggcgcgaccacaatttaaaac |
31869938 |
T |
|
| Q |
377 |
gttacactacattaccccgatgcatgtttaaagtttcaacatcaagc-aaactatacaaagccaatataaactaaaccgtgcacaattttgtt |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869939 |
gttacactacattaccccgatgcatgtttaaagtttcaacatcaagcaaaactatacaaagccaatataaactaaaccgtgcacaattttgtt |
31870031 |
T |
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