View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0087_low_14 (Length: 279)

Name: NF0087_low_14
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0087_low_14
NF0087_low_14
[»] chr8 (14 HSPs)
chr8 (44-221)||(4703680-4703857)
chr8 (85-212)||(4889866-4889993)
chr8 (114-213)||(4681463-4681562)
chr8 (59-213)||(4776467-4776621)
chr8 (85-213)||(4924895-4925023)
chr8 (101-213)||(10446825-10446937)
chr8 (58-213)||(4726206-4726361)
chr8 (114-221)||(4996400-4996507)
chr8 (85-139)||(4745795-4745849)
chr8 (44-213)||(4736748-4736917)
chr8 (62-213)||(4715063-4715214)
chr8 (85-213)||(21439333-21439461)
chr8 (63-139)||(4875165-4875241)
chr8 (85-213)||(4913401-4913529)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 4703680 - 4703857
Alignment:
Q  44 gacatcatatattaccatatttagtagagaaccttttcctagagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacccata 143  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4703680 gacatcatatattactatatttagtagagaaccttttcctagagccaaaacgtatgaaatttccctctttaagacagataattcaacccttccacccata 4703779  T
Q  144 gcgaatgctattggggtttataaagtaaaatacttctcacagtcagaaactcatcaggatgatggtaagccagctcaa 221  Q
    || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  4703780 gctaatgctattgaggtttataaagtaaaagacttctcacagtcagaaactcatcaggatgatggtaagctagctcaa 4703857  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 4889993 - 4889866
Alignment:
Q  85 gagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacccatagcgaatgctattggggtttataaagtaaaatacttctcaca 184  Q
    |||||||||  ||| ||||||||||   ||||||||||||||||||||||||||| ||    |||||  ||| | |||||||||||||| ||||||||||    
T  4889993 gagccaaaagctatcaaatttccctgactaagacagagaattcaacccttccaccaatcctcaatgcctttgagatttataaagtaaaagacttctcaca 4889894  T
Q  185 gtcagaaactcatcaggatgatggtaag 212  Q
     |||||||||||||||||||||||||||    
T  4889893 atcagaaactcatcaggatgatggtaag 4889866  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 4681463 - 4681562
Alignment:
Q  114 aagacagagaattcaacccttccacccatagcgaatgctattggggtttataaagtaaaatacttctcacagtcagaaactcatcaggatgatggtaagc 213  Q
    |||||||| ||||||||||||||||||||   ||||||  ||| |||||||||||||||| | |||||||| ||||||||||| ||||||||||||||||    
T  4681463 aagacagataattcaacccttccacccatcctgaatgccgttgaggtttataaagtaaaaaatttctcacaatcagaaactcaacaggatgatggtaagc 4681562  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 213
Target Start/End: Complemental strand, 4776621 - 4776467
Alignment:
Q  59 catatttagtagagaaccttttcctagagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacccatagcgaatgctattggg 158  Q
    ||||||||||| ||||||||| | ||||||| |||| ||| ||||||| || |  |||||| ||||||||||||||||||||||    |||||  ||| |    
T  4776621 catatttagtacagaacctttgcgtagagccgaaacatatcaaatttctctttccaagacaaagaattcaacccttccacccatcctaaatgcctttgag 4776522  T
Q  159 gtttataaagtaaaatacttctcacagtcagaaactcatcaggatgatggtaagc 213  Q
     ||||||  | |||| |||||||||| | ||||||||| ||||||||||||||||    
T  4776521 atttatatggcaaaagacttctcacaattagaaactcaacaggatgatggtaagc 4776467  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 4925023 - 4924895
Alignment:
Q  85 gagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacccatagcgaatgctattggggtttataaagtaaaatacttctcaca 184  Q
    ||||||||| |||| || |||||||  |||||||||||||||||||||||||||||||    |||||   || |||||||||||||||| | |||| |||    
T  4925023 gagccaaaaggtatcaattttcccttattaagacagagaattcaacccttccacccatcctcaatgcctatgaggtttataaagtaaaacaattcttaca 4924924  T
Q  185 gtcagaaactcatcaggatgatggtaagc 213  Q
      |||||||||| || |||||||||||||    
T  4924923 accagaaactcaacaagatgatggtaagc 4924895  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 10446825 - 10446937
Alignment:
Q  101 aatttccctctttaagacagagaattcaacccttccacccatagcgaatgctattggggtttataaagtaaaatacttctcacagtcagaaactcatcag 200  Q
    ||||||||| || |||| ||||||||||||||||||||| || |  ||||| ||||   |||||||||||||| ||||||||||| |||||||| | ||     
T  10446825 aatttcccttttcaagatagagaattcaacccttccaccaatcgtcaatgccattgaaatttataaagtaaaagacttctcacagccagaaactaaacaa 10446924  T
Q  201 gatgatggtaagc 213  Q
    |||||||||||||    
T  10446925 gatgatggtaagc 10446937  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 213
Target Start/End: Original strand, 4726206 - 4726361
Alignment:
Q  58 ccatatttagtagagaaccttttcctagagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacccatagcgaatgctattgg 157  Q
    |||||||||||| | |||||||  || |||||| || |||| || ||||||| ||||||||||| || |||||||||||||| ||    |||||  |||     
T  4726206 ccatatttagtacaaaacctttgactggagccacaaggtatcaagtttccctttttaagacagaaaagtcaacccttccaccaatcctcaatgcctttga 4726305  T
Q  158 ggtttataaagtaaaatacttctcacagtcagaaactcatcaggatgatggtaagc 213  Q
    ||| |||||| ||||| ||||||| || ||||||||||| |||| |||||||||||    
T  4726306 ggtatataaactaaaagacttctcgcattcagaaactcaacagggtgatggtaagc 4726361  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 4996400 - 4996507
Alignment:
Q  114 aagacagagaattcaacccttccacccatagcgaatgctattggggtttataaagtaaaatacttctcacagtcagaaactcatcaggatgatggtaagc 213  Q
    ||||||||| |||||||||||||||| ||    |||||  |||   |||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||    
T  4996400 aagacagaggattcaacccttccaccaatcctcaatgcctttgaaatttataaagtaaaaaacttctcacaatcagaaactgatcgggatgatggtaagc 4996499  T
Q  214 cagctcaa 221  Q
     |||||||    
T  4996500 tagctcaa 4996507  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 4745795 - 4745849
Alignment:
Q  85 gagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacc 139  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||||||||||||    
T  4745795 gagccaaaaggtatcaaatttccctctataagacagagaattcaacccttccacc 4745849  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 213
Target Start/End: Original strand, 4736748 - 4736917
Alignment:
Q  44 gacatcatatattaccatatttagtagagaaccttttcctagagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacccata 143  Q
    |||| |||||| |||||||||||||| | |||||||  || |||||  || |||| |  ||||||| |  |||| ||| ||||||||||||||||||||     
T  4736748 gacaccatatactaccatatttagtacaaaacctttgactggagccccaaggtatcatgtttccctttcgaagaaagataattcaacccttccacccatc 4736847  T
Q  144 gcgaatgctattggggtttataaagtaaaatacttctcacagtcagaaactcatcaggatgatggtaagc 213  Q
      ||||||| ||| ||||||||||  || | ||||||||   ||||||||||| || |||||||||||||    
T  4736848 ctgaatgcttttgaggtttataaacaaagagacttctcaatatcagaaactcaacaagatgatggtaagc 4736917  T

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Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 4715063 - 4715214
Alignment:
Q  62 atttagtagagaaccttttcctagagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacccatagcgaatgctattggggtt 161  Q
    |||||||| | |||||||  || |||||| || ||||  | ||||||| | ||||||||||||||||||||||||||| ||    |||||   || ||||    
T  4715063 atttagtacaaaacctttgactggagccacaaggtatctattttccctttctaagacagagaattcaacccttccaccaatcctcaatgcctatgaggtt 4715162  T
Q  162 tataaagtaaaatacttctcacagtcagaaactcatcaggatgatggtaagc 213  Q
    ||||||||||||   ||||| || |  |||||||||||||||||||||||||    
T  4715163 tataaagtaaaacttttctcgcaattggaaactcatcaggatgatggtaagc 4715214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 21439461 - 21439333
Alignment:
Q  85 gagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacccatagcgaatgctattggggtttataaagtaaaatacttctcaca 184  Q
    |||||| || |||| ||||||| || | || |||| ||||||||||||||||||||||    |||||  ||| | ||||||  | ||||  |||||||||    
T  21439461 gagccacaaggtatcaaatttctctttctaggacacagaattcaacccttccacccatcctaaatgcatttgagatttatatgggaaaagtcttctcaca 21439362  T
Q  185 gtcagaaactcatcaggatgatggtaagc 213  Q
     ||||||||||| ||||||||||||||||    
T  21439361 atcagaaactcaacaggatgatggtaagc 21439333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 4875241 - 4875165
Alignment:
Q  63 tttagtagagaaccttttcctagagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacc 139  Q
    |||||| || |||||||  || |||| |||| |||| |||||||||| |||| ||||||| ||||||||||||||||    
T  4875241 tttagtcgaaaacctttgactggagcaaaaaggtataaaatttccctttttaggacagaggattcaacccttccacc 4875165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 4913529 - 4913401
Alignment:
Q  85 gagccaaaacgtatgaaatttccctctttaagacagagaattcaacccttccacccatagcgaatgctattggggtttataaagtaaaatacttctcaca 184  Q
    |||||| || |||| ||||||| || |  |||||| ||||||||||||||||||||||    |||||  ||| | |||| |    |||| ||||||||||    
T  4913529 gagccacaaggtatcaaatttctctttccaagacaaagaattcaacccttccacccatcctaaatgcctttgagatttacatgtcaaaagacttctcaca 4913430  T
Q  185 gtcagaaactcatcaggatgatggtaagc 213  Q
     ||||||||||| ||||||||||||||||    
T  4913429 atcagaaactcaacaggatgatggtaagc 4913401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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