View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0087_low_2 (Length: 484)
Name: NF0087_low_2
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 44476427 - 44476839
Alignment:
| Q |
1 |
ttgatcagaagatgcagtaactaaaccatctaaacaagtttgttggtttgttaaaacagcactaagcaaggtttgtaattcttcgccttgagaaatggga |
100 |
Q |
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| T |
44476427 |
ttgatcagaagatgcagtaactaaaccatctaaacaagtttgttggtttgttaaaacagcactaagcaaggtttgtaattcttcgccttgagaaatggga |
44476526 |
T |
|
| Q |
101 |
agaacattgctagttttattagcagtttgatgagtgtttgataagaattcgaaattttgttgggctagaaattgacaatctttaagagctgaaattgttg |
200 |
Q |
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| T |
44476527 |
agaacattgctagttttattagcagtttgatgagtgtttgataagaattcgaaattttgttgggctagaaattgacaatctttaagagctgaaattgttg |
44476626 |
T |
|
| Q |
201 |
gttgtgacaaagatgatttatcttgaagatacgaaagtactaagtttaagaatttgcgggattgggataaggattttcggatagagaaacgaccatagtc |
300 |
Q |
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| T |
44476627 |
gttgtgacaaagatgatttatcttgaagatacgaaagtactaagtttaagaatttgcgggattgggataaggattttcggatggagaaacgaccatagtc |
44476726 |
T |
|
| Q |
301 |
aattacggtgccgttttggttagcaagtagagttttgcaaaagggagggtttacggtggactcgcagattgtttgtggtgggaccttagaattatcagct |
400 |
Q |
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| T |
44476727 |
aattacggtgccgttttggttagcaagtagagttttgcaaaagggagggtttacggtggactcgcagattgtttgtggtgggaccttagaattatcagct |
44476826 |
T |
|
| Q |
401 |
agggatgatgatg |
413 |
Q |
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| T |
44476827 |
agggatgatgatg |
44476839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 37166625 - 37166677
Alignment:
| Q |
23 |
aaaccatctaaacaagtttgttggtttgttaaaacagcactaagcaaggtttg |
75 |
Q |
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| T |
37166625 |
aaaccatctaaacatgtttgatgattagttaaaacagcactaagcaatgtttg |
37166677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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