View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0087_low_4 (Length: 433)
Name: NF0087_low_4
Description: NF0087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0087_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 37 - 420
Target Start/End: Original strand, 2062402 - 2062785
Alignment:
| Q |
37 |
gtggaaatccaggaccagctggtgcaggagctgttctgtatgcggaagatgggagactggcatcaaatttatgcagtagctcaatacgtttttactttat |
136 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2062402 |
gtggaaatcctggaccagctggtgcaggagctgttctgtatgcggaagatgggagactggtatcaaatttatgcagtagctcaatacgtttttactttat |
2062501 |
T |
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| Q |
137 |
aatgttgatttataaaatatagtagttgactgttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgc |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
2062502 |
aatgttgatttataaaatatagtagttgactgttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaaaaaatagttctgc |
2062601 |
T |
|
| Q |
237 |
tgagtatcgtgctttaatgttgggactaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtt |
336 |
Q |
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| T |
2062602 |
tgagtatcgcgctttaattttgggtctaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtt |
2062701 |
T |
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| Q |
337 |
tgtgttctattatatatggtttctacattaacaagaaaatgaaatttacatttttcttatcatatgttattggttttgcaacag |
420 |
Q |
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| T |
2062702 |
tgtgttctattatatatggtttctacattaacaagaaaatgaaatttacaattttcttataacatgttattggttttgcaacag |
2062785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 36 - 420
Target Start/End: Original strand, 2057975 - 2058355
Alignment:
| Q |
36 |
agtggaaatccaggaccagctggtgcaggagctgttctgtatgcggaagatgggagactggcatcaaatttatgcagtagctcaatacgtttttacttta |
135 |
Q |
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| T |
2057975 |
agtggaaatcctggaccagctggggcaggagttgttatgtttgcggaagatgggcggaaggtatcaactatatgcaacaattcaattggtttttatttta |
2058074 |
T |
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| Q |
136 |
taatgttgatttataaaatatagtagttgactgttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctg |
235 |
Q |
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|| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||| || ||| ||| |||| |||| |
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| T |
2058075 |
tattggtgatttataaaatatagtagctgactgttatgtttcttttcttcacagctctatcgattccgtgaaggactgggcgatcagacagatagttctg |
2058174 |
T |
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| Q |
236 |
ctgagtatcgtgctttaatgttgggactaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggt |
335 |
Q |
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| T |
2058175 |
ctgagtatcgcgctttaattttgggactaaagcaagcaatctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccaggt |
2058274 |
T |
|
| Q |
336 |
ttgtgttctattatatatggtttctacattaacaagaaaatgaaatttacatttttcttatcatatgttattggttttgcaacag |
420 |
Q |
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| T |
2058275 |
ttgtgttctat----tatggtttttgcattaacaagaaaatgaaatttacaattttcttataatatgttattggttttgcaacag |
2058355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 38 - 351
Target Start/End: Original strand, 2053866 - 2054179
Alignment:
| Q |
38 |
tggaaatccaggaccagctggtgcaggagctgttctgtatgcggaagatgggagactggcatcaaatttatgcagtagctcaatacgtttttactttata |
137 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| || || ||||| ||||| | |||||| |
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| T |
2053866 |
tggaaatcctggaccagctggtgcaggagctattctgtatgcggaagatgggagaccggtatcaaatttattcaacagttcaattggttttaattttata |
2053965 |
T |
|
| Q |
138 |
atgttgatttataaaatatagtagttgactgttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgct |
237 |
Q |
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| |||||||||||||||| |||| |||| | |||||||||||||||||||||||| |||||| ||||||||||| || | ||||||||||| |||| |
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| T |
2053966 |
tttttgatttataaaatattgtagctgaccgatatgtttcttttcttcgcagctctatcgattccgtgaaggactgggctatcaaacaaataacgttgct |
2054065 |
T |
|
| Q |
238 |
gagtatcgtgctttaatgttgggactaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggttt |
337 |
Q |
| |
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||||| || ||||| || |||||||| || ||||| ||| ||||| |||||| |||||||| ||||||||||||||||| | ||||||||| ||||||| |
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| T |
2054066 |
gagtaccgcgctttgatattgggactgaaacaagctatcaataaaggatttaagaacatcagtgtgcaaggagactccaaccttgttatcaatcaggttt |
2054165 |
T |
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| Q |
338 |
gtgttctattatat |
351 |
Q |
| |
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|||||||||||||| |
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| T |
2054166 |
gtgttctattatat |
2054179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 133 - 339
Target Start/End: Original strand, 2047400 - 2047606
Alignment:
| Q |
133 |
ttataatgttgatttataaaatatagtagttgactgttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggt |
232 |
Q |
| |
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||||| |||||||||||||||||| |||| ||| | ||||||||||||| ||||||| |||||| ||||||||||| || | ||||||||||| |
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| T |
2047400 |
ttatattgttgatttataaaatattgtagccaactcctgtgtttcttttctttacagctctatcgattccgtgaaggactgggctatcaaacaaataacg |
2047499 |
T |
|
| Q |
233 |
ctgctgagtatcgtgctttaatgttgggactaaagcaagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaacca |
332 |
Q |
| |
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|||||||||||||||||||||| |||||||| || ||||||||||||||| ||| ||||||||||| |||||| ||||||||| | | |||| |||| || |
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| T |
2047500 |
ctgctgagtatcgtgctttaattttgggacttaatcaagcaatctataaaggatataggaacatcagtgtgcatggagactccttgcttgttgtcaatca |
2047599 |
T |
|
| Q |
333 |
ggtttgt |
339 |
Q |
| |
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||||||| |
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| T |
2047600 |
ggtttgt |
2047606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 373 - 420
Target Start/End: Original strand, 2054339 - 2054386
Alignment:
| Q |
373 |
aaatgaaatttacatttttcttatcatatgttattggttttgcaacag |
420 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2054339 |
aaatgaaatttacaattttcttatcatatgttattggttttgcaacag |
2054386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 339
Target Start/End: Original strand, 2041919 - 2042089
Alignment:
| Q |
169 |
ttatgtttcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaatgttgggactaaagc |
268 |
Q |
| |
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||||||||||||||||| |||| | || ||| || |||||||| || | ||||||||||| |||||||||||| ||||| || || ||| | || |
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| T |
2041919 |
ttatgtttcttttcttcatagctatatcaattccgagaaggactgggctatcaaacaaataatgttgctgagtatcgcgctttgatcttaggattgaatt |
2042018 |
T |
|
| Q |
269 |
aagcaatctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgt |
339 |
Q |
| |
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|||||||| | | | ||| ||| ||||||| ||||||||||||||| || ||||||||| ||||||||| |
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| T |
2042019 |
aagcaatccagagaggatatagaaacatcaatgtgcaaggagactcagaacttgttatcaatcaggtttgt |
2042089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 2047302 - 2047383
Alignment:
| Q |
30 |
gcattaagtggaaatccaggaccagctggtgcaggagctgttctgtatgcggaagatgggagactggcatcaaatttatgca |
111 |
Q |
| |
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|||| |||||| ||||| ||||||||||||||||||||||| || |||| |||||| || | |||| || |||||| |||| |
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| T |
2047302 |
gcatcaagtgggaatccgggaccagctggtgcaggagctgtactatatgatgaagattggtgtctggtattaaatttttgca |
2047383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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