View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0088_high_12 (Length: 288)
Name: NF0088_high_12
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 30806637 - 30806881
Alignment:
| Q |
29 |
aactctattgtggctttctctaacgccagctctacatatctctaataactgcaatctacattcattctcttggtacattttaaatcatctaggttgatcc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30806637 |
aactctattgtggctttctctaacgccagctctacatatctccaataactgcaatctacattcattctcttggtacattttaaatcatctaggttgatcc |
30806736 |
T |
|
| Q |
129 |
ttttgtggctttcatatagattctggacaactgcccaggagactagnnnnnnnnnccttctcttgtctttatcagctgcctaaggatagaacagcaatgc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30806737 |
ttttgtggctttcatatagattctggacaactgcccaggagactagttttttt----ttctcttgtctttatcaactgcctaaggatagaacagcaatgc |
30806832 |
T |
|
| Q |
229 |
atgctgttctttggaattggtatgataatgttattactctttggttcat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30806833 |
atgctgttctttggaattggtatgataatgttattactctttggttcat |
30806881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 30807883 - 30808028
Alignment:
| Q |
29 |
aactctattgtggctttctctaacgccagctctacatatctctaataactgcaatctacattcattctcttggtacattttaaatcatctaggttgatcc |
128 |
Q |
| |
|
|||||||||| |||||||||||| | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30807883 |
aactctattgcagctttctctaacactagttctacatatctctaataactgccatctacattcattctcttggtacattttaaatcatctaggttgatcc |
30807982 |
T |
|
| Q |
129 |
ttttgtggctttcatatagattctggacaactgcccaggagactag |
174 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || |||||||||| |
|
|
| T |
30807983 |
ttttgtggctttcgtatagattctggacaactacctaggagactag |
30808028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 30805376 - 30805445
Alignment:
| Q |
208 |
ctaaggatagaacagcaatgcatgctgttctttggaattggtatgataatgttattactctttggttcat |
277 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
30805376 |
ctaaggatagaactgcaatgcatgctgttctgtggaattggtatgataatgttattacttttgggttcat |
30805445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1707 times since January 2019
Visitors: 1304