View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0088_high_14 (Length: 276)

Name: NF0088_high_14
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0088_high_14
NF0088_high_14
[»] chr7 (4 HSPs)
chr7 (19-248)||(37370336-37370582)
chr7 (139-209)||(38836164-38836234)
chr7 (30-243)||(34483814-34484024)
chr7 (148-203)||(49094528-49094584)
[»] chr8 (3 HSPs)
chr8 (19-205)||(2611803-2611989)
chr8 (33-205)||(15795933-15796104)
chr8 (19-190)||(40318469-40318639)
[»] chr4 (3 HSPs)
chr4 (30-205)||(34160914-34161089)
chr4 (25-205)||(41309880-41310060)
chr4 (139-209)||(2049009-2049079)
[»] chr2 (2 HSPs)
chr2 (25-205)||(21203263-21203439)
chr2 (135-194)||(21949867-21949927)
[»] chr1 (11 HSPs)
chr1 (19-201)||(43699357-43699540)
chr1 (19-204)||(13129118-13129303)
chr1 (34-205)||(11084569-11084740)
chr1 (31-205)||(3525881-3526055)
chr1 (19-205)||(27491812-27491998)
chr1 (85-205)||(41114469-41114589)
chr1 (25-205)||(52316065-52316232)
chr1 (19-205)||(34106360-34106546)
chr1 (19-75)||(41114626-41114682)
chr1 (210-244)||(13129061-13129095)
chr1 (212-244)||(43699297-43699329)
[»] chr6 (1 HSPs)
chr6 (19-205)||(8859165-8859351)
[»] chr3 (1 HSPs)
chr3 (19-205)||(34466687-34466870)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 37370582 - 37370336
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||| |||     
T  37370582 gaagctaaagactatcctataacaacaaaactaagtgtagcctgccaataaagaatatggcttcaaatgtccctacagaaatctaatcagatatagcatc 37370483  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc------------- 205  Q
    ||||||||        |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||                 
T  37370482 tgtaaagcaaaaaagatgaatatcaaaatttcctaatcctctaatcatcatatttgggattgtttttgataacaccatgtttgaatcttgtattcatatt 37370383  T
Q  206 ----gagtcagtctcaataagatttgtagaggttttgtgtttttatt 248  Q
        |||||||||||||||||||||||||||||||||||||||||||    
T  37370382 atcagagtcagtctcaataagatttgtagaggttttgtgtttttatt 37370336  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 38836234 - 38836164
Alignment:
Q  139 tatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatcgagt 209  Q
    |||||||  ||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||| |||||    
T  38836234 tatcaaatcttcctaatcctctaatcacaatatttgggattgcttttgataacaccatttttggaacgagt 38836164  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 34484024 - 34483814
Alignment:
Q  30 ctatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaagcnnn 129  Q
    |||||||||||||||||||| ||||||| | ||||||  ||||||| | || || ||||| | | | ||||||||||||||| | ||| | | | |        
T  34484024 ctatcctatagcaacaaaacaaagtgtaacatgccaaggaagcataaggctgcacatgtctcaaaaaaaatctaatcagataaagcatctattatgtaaa 34483925  T
Q  130 nnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc-gagtcagtctcaataagatttgt 228  Q
         ||| |||||||||||| || |||| |||||| ||||| | ||||||||||||||||||||||||    ||| |||||| |||||||||||| |||    
T  34483924 atagatgagtatcaaaatttcatattcctctaatcaccatatctaggattgcttttgataacaccatgt----atcagagtcaatctcaataagatctgt 34483829  T
Q  229 agaggttttgtgttt 243  Q
    ||  |||||||||||    
T  34483828 agcagttttgtgttt 34483814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 49094528 - 49094584
Alignment:
Q  148 ttcctaatcctttaatcatca-tatttgggattgcttttgataacaccatgtttgga 203  Q
    ||||||||||| ||||||  | |||||||||||||||||||||||||| | ||||||    
T  49094528 ttcctaatcctctaatcacaaatatttgggattgcttttgataacaccttttttgga 49094584  T

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Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 2611803 - 2611989
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| |||||||| ||||||||||||||| |||||||||||| ||| |||| | || ||||||||| || |||| |||||||||||||| |||     
T  2611803 gaagccaaaggctatcctaaagcaacaaaactaagagtagcctgccaagaaaacatatggctgcatatgtccttaaagaattctaatcagatatagcatc 2611902  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||||||||        |||||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||    
T  2611903 tgtaaagcaaaaaagatgaatatcaaaatttcctaatccgctaatcaccatatttgagattgcttttgataacaccatgtttggatc 2611989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 15795933 - 15796104
Alignment:
Q  33 tcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaagcnnnnnn 132  Q
    ||||||||||||||||| |||||||||||||||  |||||||| | || || ||| ||||| ||||||||||||||||||||||| | | | ||          
T  15795933 tcctatagcaacaaaacaaagtgtagcctgccag-aaagcatagggctgcacatgcccctaaagaaatctaatcagatataacatctattatgcaacata 15796031  T
Q  133 nntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
      ||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  15796032 gatgagtaacgaaatttcctaatcctctaatcatcatatttgggattgcttttgataacatcatgtttggatc 15796104  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 40318469 - 40318639
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| |||||||||||||||||||| |||||||||||||||| |||||||| |  | || ||| || || |||| || ||||||||||| |||     
T  40318469 gaagccaaaggctatcctatagcaacaaaacaaagtgtagcctgccaagaaagcatagggttgcacatg-ccttaaagaattcaaatcagatatagcatc 40318567  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataa 190  Q
    | | | ||        ||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  40318568 tcttatgcaaaatagatgagtatcaaaatttcctaatcctctaatcaccatatttgggattacttttgataa 40318639  T

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Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 34160914 - 34161089
Alignment:
Q  30 ctatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaagcnnn 129  Q
    |||||||||||||||||||| ||||||| | |||||| |||||||| |  | || ||| ||||| ||||||||||||||||| | ||||||||||||       
T  34160914 ctatcctatagcaacaaaacaaagtgtaacttgccaagaaagcatagggttgcacatgcccctaaagaaatctaatcagataaagcatatgtaaagcaaa 34161013  T
Q  130 nnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
         ||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||    
T  34161014 atagatgagtatcaaaatttcctaatcctctaatcaccatatttaggattgcttttgataacaccatgtttggatc 34161089  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 41310060 - 41309880
Alignment:
Q  25 aaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaa 124  Q
    |||| ||| |||||||||||||||| |||||||||||||||| |||||||| | || || ||| ||||| |||| |||||||||||||| ||| ||| |     
T  41310060 aaaggctaccctatagcaacaaaacaaagtgtagcctgccaagaaagcatagggctgcacatgcccctaaagaattctaatcagatatagcatctgttat 41309961  T
Q  125 gcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||        ||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||    
T  41309960 gcaaaatagatgagtatcaaaatttcctaatcctctaatcaccatatttgggattgattttgattacaccatgtttggatc 41309880  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 2049079 - 2049009
Alignment:
Q  139 tatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatcgagt 209  Q
    |||||||  ||||||||||| ||||||  ||||||||||||||||||||||||||| | |||||| |||||    
T  2049079 tatcaaaccttcctaatcctctaatcacaatatttgggattgcttttgataacaccctttttggaacgagt 2049009  T

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Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 21203439 - 21203263
Alignment:
Q  25 aaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaa 124  Q
    |||| |||||||||||||||||||    |||||||||||||| ||||| || | || || ||||||||| |||| |||||||| ||||| ||| ||| ||    
T  21203439 aaaggctatcctatagcaacaaaa----gtgtagcctgccaagaaagcttatggctgcacatgtccctaaagaattctaatcatatatagcatgtgtgaa 21203344  T
Q  125 gcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||        |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21203343 gcaaaaaagatgaatatcaaaatttcctaatcctctaatcatcatatttgggattgcttttgataacaccatgtttggatc 21203263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 21949867 - 21949927
Alignment:
Q  135 tgaatatcaaaatttcctaatcctttaatcatca-tatttgggattgcttttgataacacc 194  Q
    |||||||||||  ||||||||||| ||||||  | |||||||||||||||||||| |||||    
T  21949867 tgaatatcaaatcttcctaatcctctaatcacaaatatttgggattgcttttgattacacc 21949927  T

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Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 43699540 - 43699357
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| |||||||||||||||||||||||||||||| |||||| |||||||| | || || ||||||||| |||| |||||| ||||||| |||     
T  43699540 gaagccaaaggctatcctatagcaacaaaactaagtgtagcttgccaagaaagcatatggctgcacatgtccctaaagaattctaataagatatagcatc 43699441  T
Q  119 tgtaaagcnnnnnnnn-tgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttg 201  Q
    |||||| |         |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||    
T  43699440 tgtaaaacaaaaaaagatgaatatcaaaatttcctaatcctctaatcaccatatttgggattgcttttaataacaccatgtttg 43699357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 13129303 - 13129118
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| ||| |||||||||||||||| |||||||||||||||| |||||||| | || || ||| ||||| |||| |||||||||||||| |||     
T  13129303 gaagccaaaggctaccctatagcaacaaaacaaagtgtagcctgccaagaaagcatagggctgcacatgcccctaaagaattctaatcagatatagcatc 13129204  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggat 204  Q
    ||| | ||        ||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||||    
T  13129203 tgttatgcaaaataaatgagtatcaaaatttcctaatcctctaatcaccatatttgggattgattttgatgacaccatgtttggat 13129118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 11084740 - 11084569
Alignment:
Q  34 cctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaagcnnnnnnn 133  Q
    |||||||||||||||| |||||||||||||||| |||||||| |||| || ||| ||||| |||| |||||||||||||| ||| ||| | ||           
T  11084740 cctatagcaacaaaacaaagtgtagcctgccaagaaagcataggactgcacatgcccctaaagaattctaatcagatatagcatctgttatgcaaaatag 11084641  T
Q  134 ntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
     ||| ||||||||||||||||||||  ||||| ||||||| |||||| ||||||| ||||||||||||||||    
T  11084640 atgagtatcaaaatttcctaatcctccaatcaccatatttaggattgattttgatgacaccatgtttggatc 11084569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 3526055 - 3525881
Alignment:
Q  31 tatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaagcnnnn 130  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||||   || || ||| ||||| ||||||||||||| ||||| ||||||| | ||        
T  3526055 tatcctatagcaacaaaacaaagtgtaacctgccaagaaagcatagagctgcacatgcccctaaagaaatctaatcaaatatagcatatgttatgcaaaa 3525956  T
Q  131 nnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
        ||| |||||||||||||| ||||| |||||| ||||| | |||||||||||||||||||||||||||||||    
T  3525955 tagatgagtatcaaaatttcctgatcctctaatcaccatatctaggattgcttttgataacaccatgtttggatc 3525881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 27491998 - 27491812
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| |||||||||||||||||| | ||||||||||| | || |||||||| | || || |||||  || |||| |||||||||||||| |||     
T  27491998 gaagccaaaggctatcctatagcaacaaagcaaagtgtagcctactaagaaagcatagggctgcacatgtctttaaagaagtctaatcagatatagcatc 27491899  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||| | ||        ||| ||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||| |||||||||    
T  27491898 tgttatgcaaaatagatgagtatcaaaattttctaatcctctaatcaccatatttggggttgcttttgataacaccaagtttggatc 27491812  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 41114589 - 41114469
Alignment:
Q  85 atgtccctacagaaatctaatcagatataacatatgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttt 184  Q
    ||||||||| |||| |||||||||||||| ||| |||||| |        |||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  41114589 atgtccctaaagaattctaatcagatatagcatctgtaaaacaaaaaagttgaatatcaaaatttcctaatcctctaatcaccatatttgggattacttt 41114490  T
Q  185 tgataacaccatgtttggatc 205  Q
    |||||||||||| ||||||||    
T  41114489 tgataacaccatatttggatc 41114469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 52316232 - 52316065
Alignment:
Q  25 aaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaa 124  Q
    |||| |||||||||||||||||||| ||||||| | |||||| |||||||| | || || ||| ||||| |||||| |||||||||| | ||| ||| |     
T  52316232 aaaggctatcctatagcaacaaaacaaagtgtaacttgccaagaaagcatagggctgcacatgcccctaaagaaatataatcagataaagcatttgttat 52316133  T
Q  125 gcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||             ||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||    
T  52316132 gc-------------atcaaaatttcctaatcctctaatcaccatatctaggattgcttttgataacaccatgtttggatc 52316065  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 34106360 - 34106546
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| ||| |||||||||||||||  |||| || |||||||| |||||||| |  | || ||| || || |||| ||||||||||||||||||     
T  34106360 gaagccaaaggctaccctatagcaacaaaataaagtataacctgccaagaaagcatagggttgcacatgcccttaaagaattctaatcagatataacatc 34106459  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||| | ||        ||| ||| |||| ||| ||||||| |||||  |||||||||||||| ||||||| ||||||||||||||||    
T  34106460 tgttatgcaaaatagatgagtataaaaaattcataatcctctaatccccatatttgggattgattttgatgacaccatgtttggatc 34106546  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 41114682 - 41114626
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcata 75  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  41114682 gaagccaaaggctatcctatagcaacaaaactaagtgtagcctgccaagaaagcata 41114626  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 13129095 - 13129061
Alignment:
Q  210 cagtctcaataagatttgtagaggttttgtgtttt 244  Q
    ||||||||||||||| |||||||||||||||||||    
T  13129095 cagtctcaataagatctgtagaggttttgtgtttt 13129061  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 43699329 - 43699297
Alignment:
Q  212 gtctcaataagatttgtagaggttttgtgtttt 244  Q
    ||||||||||||| |||||||||||||||||||    
T  43699329 gtctcaataagatctgtagaggttttgtgtttt 43699297  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 8859351 - 8859165
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| ||||||||||| |||||||| ||||||||||| |||| |||||||| | || || ||| |||||  |||||||||| ||||||| |||     
T  8859351 gaagccaaaggctatcctatagaaacaaaacaaagtgtagcctaccaagaaagcatagggctgcacatgcccctaatgaaatctaataagatatagcatc 8859252  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||| | ||        | | |||||||||||||||||||| ||||||  |||| | |||||||||||||||||||||||||||||||    
T  8859251 tgttatgcaaaataaataagtatcaaaatttcctaatcctctaatcacaatatctaggattgcttttgataacaccatgtttggatc 8859165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 34466687 - 34466870
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| |||||||||| ||||||||   |||||||||||| |  ||||||||   || || ||| ||||| ||||||||||| ||||||| |||     
T  34466687 gaagccaaaggctatcctataacaacaaaa---agtgtagcctgctatgaaagcatagagctgcacatgcccctaaagaaatctaattagatatagcatc 34466783  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||| | ||        ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||    
T  34466784 tgttatgcaaaatagatgagtatcaaaatttcctaatcctctaatcaccatatttgggattgcttttgataacatcatgtttggatc 34466870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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