View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0088_high_17 (Length: 255)
Name: NF0088_high_17
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_high_17 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 5288764 - 5288536
Alignment:
| Q |
27 |
tcaattttgatatcttgtgttctttttaagtgttccatgtcattcattatattttgtcaaggaaaatgtttccattcatttagtatttgttctttttatt |
126 |
Q |
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| T |
5288764 |
tcaattttgatatcttgtgttctttttaagtgttccatgtcattcattatattttgtcagggaaaatgtttccattcatttagtatttgttctttttatt |
5288665 |
T |
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| Q |
127 |
agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga |
226 |
Q |
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| T |
5288664 |
agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga |
5288565 |
T |
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| Q |
227 |
tactctcatgtactcaacactcgtcgatc |
255 |
Q |
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| T |
5288564 |
tactctcatgtactcaacactcgtcgatc |
5288536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 127 - 255
Target Start/End: Original strand, 8034753 - 8034877
Alignment:
| Q |
127 |
agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga |
226 |
Q |
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| T |
8034753 |
agaagtttggtgtgatcatctatctatttgttgttcttctcc----caattcctgttggaccaaacctttaattaaccgtctcgttaccatcgttcccga |
8034848 |
T |
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| Q |
227 |
tactctcatgtactcaacactcgtcgatc |
255 |
Q |
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| T |
8034849 |
tgctctcaagtattcaacactcgttgatc |
8034877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 51380273 - 51380205
Alignment:
| Q |
183 |
tggaccaaaccttcaattaaccgtctcgttatcatcgttctcgatactctcatgtactcaacactcgtc |
251 |
Q |
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| T |
51380273 |
tggaccaaacctgcaattaaccgtctcgttatcatcgttctcgatgctcttaggtactcaacactcgtc |
51380205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 42965997 - 42966069
Alignment:
| Q |
54 |
aagtgttccatgtcattcattatattttgtcaaggaaaatgtttccattcatttagtatttgttctttttatt |
126 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||| ||||||| |||||||||| ||||||||| |
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| T |
42965997 |
aagtgttccatgtcatttattatattttgtcaagaaaaatattttcattcatctagtatttgtcctttttatt |
42966069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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