View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0088_high_20 (Length: 248)
Name: NF0088_high_20
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_high_20 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: scaffold0160 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 29939 - 29758
Alignment:
| Q |
9 |
acactgaaggctctaaaagctgaaattatggctaaaacaaagaagcagccaaaagtaatcatatggaggatcaaagccagcttgactttgctgcaaaatt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29939 |
acactgaaggctctaaaagctgaaattatggctaaaacaaagaagcagccaaaagtaatcatatggaggatcaaagccagcttcactttgctgcaaaatt |
29840 |
T |
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| Q |
109 |
ttccataagaactgcaggcttgactccaagaatcttctctagcaccattataagcaaggtaatatatctccattgttgcagc |
190 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29839 |
ttccgtaagaactgcaggcttgactccaagaatcttctctagcaccattataagcaaggtaatatatctccattgtagcagc |
29758 |
T |
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