View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0088_low_1 (Length: 567)
Name: NF0088_low_1
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 4 - 464
Target Start/End: Original strand, 8015167 - 8015627
Alignment:
| Q |
4 |
aagtcaaggtgcagcaaatgttaccaactcatgacatttatttgcttggttttgggcacagaatttgaacaagtaatttagtacattaccgtccttttct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8015167 |
aagtcaaggtgcagcaaatgttaccaactcatgacatttatttgcttggttttgggcacagaatttgaacaagtaatttagtacattaccgtccttttct |
8015266 |
T |
|
| Q |
104 |
ttgaatattgaagaaaaagaatgcacgagtgatggtactttaagctgattcataggctcacgtgaaatgccacatcttatctaacaactactctttcacg |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8015267 |
ttga---ttgaagaaaaagaatgcacgagtgatggtactttaagctgattcagaggctcacgtgaaatgccacatcttatctaacaactactctttcacg |
8015363 |
T |
|
| Q |
204 |
catattctcataacttatttcttgactaattaaaatgaactgataaataaccaatgcatattataaataccacaaataaataaaagtacgtatatatgat |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8015364 |
catattctcataacttatttcttgactaattaaaatgaactgataaataaccaatgcatattataaataccacaaataaataaaagtacgtatatatgat |
8015463 |
T |
|
| Q |
304 |
gtgt---cgaataaaaccactttttgaattgaaaagaagcaaatactgcaaagagatactggaggagagtagatagcagcaggtccaataatacaatttc |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8015464 |
gtgtatacgaataaaaccactttttgaattgaaaagaagcaaatactgcaaagagatactggaggagagtagatagcagcaggtccaataatacaatttc |
8015563 |
T |
|
| Q |
401 |
agtacgccagttgttagagcagttttgattctattctacttctatacatgcacgattagaatta |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
8015564 |
agtacgccagttgttagagcagttttgattctgttctacttcaatacatgcacgattggaatta |
8015627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1328 times since January 2019
Visitors: 1298