View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0088_low_18 (Length: 311)

Name: NF0088_low_18
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0088_low_18
NF0088_low_18
[»] chr2 (5 HSPs)
chr2 (30-289)||(32312863-32313122)
chr2 (115-267)||(31792849-31793001)
chr2 (150-289)||(32788168-32788309)
chr2 (56-92)||(32788087-32788123)
chr2 (93-128)||(32788139-32788174)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 32313122 - 32312863
Alignment:
Q  30 aatagggccattactaatcacactctaatcaatttgcagatgaaaacatttcaaaaacaactaacagagtatagactatgcagcatagcaataaacttgc 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32313122 aatagggccattactaatcacactctaatcaatttgcagatgaaaacatttcaaaaacaactaacaaagtatagactatgcagcatagcaataaacttgc 32313023  T
Q  130 ttacccagcagctcctattgaaacatgaaacttgtcttttaagattacatagagagtctaacatgctatgaaaaattatattacattttttcgtcatttt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32313022 ttacccagcagctcctattgaaacatgaaacttgtcttttaagattacatagagagtctaacatgctatgaaaaattatattacattttttcgtcatttt 32312923  T
Q  230 ctaatttgtatctcactttctttcggaatattacacatcacaacaatgttggaatctgtg 289  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32312922 ctaatttgcatctcactttctttcggaatattacacatcacaacaatgttggaatctgtg 32312863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 115 - 267
Target Start/End: Complemental strand, 31793001 - 31792849
Alignment:
Q  115 tagcaataaacttgcttacccagcagctcctattgaaacatgaaacttgtcttttaagattacatagagagtctaacatgctatgaaaaattatattaca 214  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  31793001 tagcaataaacttgcttccccagcagctcctattgaaacatgaaacttgtcttttaagattacatagagagtctaacatactatgaaaaattaaattaca 31792902  T
Q  215 ttttttcgtcattttctaatttgtatctcactttctttcggaatattacacat 267  Q
    |||||||||| | |||||||||||||||| ||  |||||||||||||||||||    
T  31792901 ttttttcgtcttcttctaatttgtatctctctcactttcggaatattacacat 31792849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 150 - 289
Target Start/End: Original strand, 32788168 - 32788309
Alignment:
Q  150 aaacatgaaacttgtcttttaagattacatagagagtctaacatgctatgaaaaattatattacatttt--ttcgtcattttctaatttgtatctcactt 247  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||     
T  32788168 aaacttgaaacttgtcttttaagattacatagagagtctaacatgctatgaaaaattaaattacattttttttcgtcattttctaatttgtatctcactc 32788267  T
Q  248 tctttcggaatattacacatcacaacaatgttggaatctgtg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32788268 tctttcggaatattacacatcacaacaatgttggaatctgtg 32788309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 32788087 - 32788123
Alignment:
Q  56 aatcaatttgcagatgaaaacatttcaaaaacaacta 92  Q
    ||||||||||||||||||||||||| |||||||||||    
T  32788087 aatcaatttgcagatgaaaacatttaaaaaacaacta 32788123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 32788139 - 32788174
Alignment:
Q  93 acagagtatagactatgcagcatagcaataaacttg 128  Q
    ||||||||||||||||||||||||| ||||||||||    
T  32788139 acagagtatagactatgcagcatagtaataaacttg 32788174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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