View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0088_low_2 (Length: 562)
Name: NF0088_low_2
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 8015188 - 8014719
Alignment:
| Q |
1 |
aacatttgctgcaccttgacttcgagacttattttcaagttaaatctgactgaatttgacgatgcttgtaattgtatatgtaaattgtaataactatagt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8015188 |
aacatttgctgcaccttgactttgagacttattttcaagttaaatctgactgaatttgacgatgcttgtaattgtatatgtaaattgtaataactatagt |
8015089 |
T |
|
| Q |
101 |
tctgtctagtagnnnnnnnncttcttaattacctaccctatgtctcatagctttccatggccacataaatcacccaattcagatatttgtagcccaagat |
200 |
Q |
| |
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||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8015088 |
tctgtctcgtagttttttt--ttcttc-ttacctactctatgtctcatagctttccatggccacataaatcacccaattcagatatttgcagcccaagat |
8014992 |
T |
|
| Q |
201 |
atatggtcttcacaagatctaaatgtcaagtaaaaataaaatttgaaaattacccaatttaacaatatttaagccctatgaagtcaacaaatccaaaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8014991 |
atatggtcttcacaagatctaaatgtcaagtaaaaataaaatttgaaaattacccaatttaacaatatttaagccctatgaagtcaacaaatgcaaaaca |
8014892 |
T |
|
| Q |
301 |
cattcagtacttttaatatttagtccataaaggaagtatttagaccaaatctaaagtagtgtataaagcacatcaaaatcaatttatcatcaaccaacta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8014891 |
cattcagtacttttaatatttagtccata----aagtatttagaccaaatctaaagtagtgtataaagcacatcaaaatcaatttatcatcaaccaacta |
8014796 |
T |
|
| Q |
401 |
atagtcataggatacagatgttattgtattcttcattaacataatacaattatggttttaaactatgatgatgtcca |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8014795 |
atagtcataggatacagatgttattgtattcttcattaacataatacaattatggttttaaactatgatgatgtcca |
8014719 |
T |
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