View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0088_low_21 (Length: 303)
Name: NF0088_low_21
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_low_21 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 18341831 - 18341958
Alignment:
| Q |
165 |
actaaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtattttcacaatgttttcggtgatattagtaagtg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18341831 |
actaaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtattttcacaatgttttcggtgatattagtaagtg |
18341930 |
T |
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| Q |
265 |
gaatttgagccgttctttttcgattcat |
292 |
Q |
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| T |
18341931 |
gtatttgaaccgttctttttcgattcat |
18341958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 22100820 - 22100912
Alignment:
| Q |
165 |
actaaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtattttcacaatgttttcggtgatatta |
257 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22100820 |
actaaaaagtatttgttgttttctcgatgttttctaacgttttcaacaaaaccctctcgtaaaagtattttcacaatgttttcggtgatatta |
22100912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 22101198 - 22101234
Alignment:
| Q |
256 |
tagtaagtggaatttgagccgttctttttcgattcat |
292 |
Q |
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| T |
22101198 |
tagtaagtggtatttgaaccgttctttttcgattcat |
22101234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 138525 - 138399
Alignment:
| Q |
165 |
actaaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtattttcacaatgttttcggtgatattagtaagtg |
264 |
Q |
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| T |
138525 |
actaaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtatttt-acaatgttttcggtgatattagtaagtg |
138427 |
T |
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| Q |
265 |
gaatttgagccgttctttttcgattcat |
292 |
Q |
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| T |
138426 |
gtatttgaaccgttctttttcgattcat |
138399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 277132 - 277183
Alignment:
| Q |
205 |
tttcaacaaaaccctctcgtaaaagtattttcacaatgttttcggtgatatt |
256 |
Q |
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|||||| |||||||||||||| ||||||||| |||||||||||||| ||||| |
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| T |
277132 |
tttcaagaaaaccctctcgtagaagtattttaacaatgttttcggtaatatt |
277183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 13168463 - 13168589
Alignment:
| Q |
165 |
actaaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtattttcacaatgttttcggtgatattagtaagtg |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13168463 |
actaaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtatttt-acaatgttttcggtgatattagtaagtg |
13168561 |
T |
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| Q |
265 |
gaatttgagccgttctttttcgattcat |
292 |
Q |
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| T |
13168562 |
gtatttgaaccgttctttttcgattcat |
13168589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 1359 - 1267
Alignment:
| Q |
168 |
aaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtattttcacaatgttttcggtgatattagta |
260 |
Q |
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||||| |||||||||| ||| | |||||| || ||||| || | |||||| ||||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
1359 |
aaaaaatatttgttgcgttcccgatgtttccttacgttatcgataaaaccttctcgtaaaagtattttaacaatgttttcagtgatgttagta |
1267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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