View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0088_low_24 (Length: 300)
Name: NF0088_low_24
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3639271 - 3639491
Alignment:
| Q |
1 |
cattgatataacagaggtaacaatgtaaaaatggtgtagcaaattatttgattaatgtggaatagtgaaaacagatacaaggtagttccagagctagaag |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3639271 |
cattgatataacagaggtaacaatgtaaaaatggtgtagcaaattatttgattaatgtggaatagtgaaaacagatacaaggtagctccagagctagaag |
3639370 |
T |
|
| Q |
101 |
ctcctcaacagagaaaggtattccctaactgcctaaccgtaagggttagaattcaagatgattgcttaattccttcattcttcctactccatcttatttg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3639371 |
ctcctcaacagagaaaggtattccctaactgcctaaccgtaagggttagaattcaagatgattgcttaattccttcattcttcctactccatcttatttg |
3639470 |
T |
|
| Q |
201 |
ctcattctctcttttctttct |
221 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
3639471 |
ctcattctctcttttctttct |
3639491 |
T |
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