View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0088_low_29 (Length: 278)

Name: NF0088_low_29
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0088_low_29
NF0088_low_29
[»] chr4 (5 HSPs)
chr4 (54-269)||(48790091-48790306)
chr4 (54-269)||(15825622-15825837)
chr4 (55-259)||(48816402-48816606)
chr4 (55-259)||(48807839-48808047)
chr4 (55-258)||(48833892-48834095)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 54 - 269
Target Start/End: Complemental strand, 48790306 - 48790091
Alignment:
Q  54 gtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttgataccc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48790306 gtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttgataccc 48790207  T
Q  154 aaccgtgattgtccaccacatgctcaattcattgatacatacattcactctgatgatggtaccccaagcatcttgaagaatgcaatctgtgttttcgaac 253  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48790206 aaccgtgattgtccaccacatgcccaattcattgatacatacattcactctgatgatggtaccccaagcatcttgaagaatgcaatttgtgttttcgaac 48790107  T
Q  254 aatatgatagtattat 269  Q
    ||||||||||||||||    
T  48790106 aatatgatagtattat 48790091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 54 - 269
Target Start/End: Complemental strand, 15825837 - 15825622
Alignment:
Q  54 gtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttgataccc 153  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||||||||| ||| ||||| |||||||||||     
T  15825837 gtttgtgccataccaagatccaacagaagagttttactttaagacatttttcgatgctggagagtatggatttggtcgatctactgtttctttgatacct 15825738  T
Q  154 aaccgtgattgtccaccacatgctcaattcattgatacatacattcactctgatgatggtaccccaagcatcttgaagaatgcaatctgtgttttcgaac 253  Q
    || ||||| |||||||||||  |||| |||||||||||||||||||||||||  |||||||| |||||| |||||||||||||||| |||||||| ||||    
T  15825737 aatcgtgactgtccaccacactctcatttcattgatacatacattcactctgtagatggtacaccaagcctcttgaagaatgcaatttgtgtttttgaac 15825638  T
Q  254 aatatgatagtattat 269  Q
    |||||| |||||||||    
T  15825637 aatatggtagtattat 15825622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 55 - 259
Target Start/End: Complemental strand, 48816606 - 48816402
Alignment:
Q  55 tttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttgataccca 154  Q
    |||||||| || ||||| ||||| ||||| |||||||||||||| || || |||||||| ||||||||||||||||| || || |||||||||||||| |    
T  48816606 tttgtgccttatcaagacccaaccgaagagttttactttaagactttctttgattctggagagtttggatttggtctgtcaacggtgtctttgataccta 48816507  T
Q  155 accgtgattgtccaccacatgctcaattcattgatacatacattcactctgatgatggtaccccaagcatcttgaagaatgcaatctgtgttttcgaaca 254  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||| | |||||||||||||| ||||| || |||||    
T  48816506 atcgtgattgtccaccacatgctcagttcattgatacatacattcactcggctgatggtacaccaagcctattgaagaatgcaatttgtgtgtttgaaca 48816407  T
Q  255 atatg 259  Q
    |||||    
T  48816406 atatg 48816402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 259
Target Start/End: Complemental strand, 48808047 - 48807839
Alignment:
Q  55 tttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttgataccca 154  Q
    |||||||| || ||||| ||||| |||||||||||||||||||| || || |||||||| |||||||||||||  || || || |||||||||||||| |    
T  48808047 tttgtgccttatcaagacccaaccgaagaattttactttaagactttctttgattctggagagtttggatttgccctgtcaacggtgtctttgataccta 48807948  T
Q  155 accgtgattgtccaccacatgctca----attcattgatacatacattcactctgatgatggtaccccaagcatcttgaagaatgcaatctgtgttttcg 250  Q
    | |||||||||||||||||||||||    ||||||  |||||||||||||||| | ||||||||| |||||| | |||||||||||||| ||| | || |    
T  48807947 atcgtgattgtccaccacatgctcagttcattcatacatacatacattcactcggctgatggtacaccaagcctattgaagaatgcaatttgtctgtttg 48807848  T
Q  251 aacaatatg 259  Q
    |||||||||    
T  48807847 aacaatatg 48807839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 258
Target Start/End: Original strand, 48833892 - 48834095
Alignment:
Q  55 tttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttgataccca 154  Q
    ||||||||||||||||||||| | || ||||||||||||||||| || || ||| |||| ||||||| ||||||| | || || |||||||||||||| |    
T  48833892 tttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttgaatttggtttgtcaacggtgtctttgataccta 48833991  T
Q  155 accgtgattgtccaccacatgctcaattcattgatacatacattcactctgatgatggtaccccaagcatcttgaagaatgcaatctgtgttttcgaaca 254  Q
    | | ||||||||||||| ||||  | |||||||||||||||| |||||| |  || ||| | |||| |  ||||||||||||| | ||| |||| |||||    
T  48833992 atcctgattgtccaccaaatgccgagttcattgatacatacactcactcagcagagggtgcaccaatccccttgaagaatgcagtttgtatttttgaaca 48834091  T
Q  255 atat 258  Q
    ||||    
T  48834092 atat 48834095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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