View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0088_low_3 (Length: 554)
Name: NF0088_low_3
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_low_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 39 - 554
Target Start/End: Complemental strand, 42475932 - 42475417
Alignment:
| Q |
39 |
agacaataaccaaagaagcaaatcttcttgtctcctccttacagatatccaatccttcacatatatctgttttcatgcaaatattaacctcctatatgta |
138 |
Q |
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| T |
42475932 |
agacaataaccaaagaagcaaatcttcttgtctcctccttacagatatccaatccttcacatatatctgttttcatgcaaatattaacctcctatatgta |
42475833 |
T |
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| Q |
139 |
gaacttgcaaataagttttactctttaactcctgcagccaaagagcagtaacgattaactctaaacctgtgagatgaaatatccacttgctgaatcaaaa |
238 |
Q |
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| T |
42475832 |
gaacttgcaaataagttttactctttaactcctgcagccaaagagcactaacgattaactctaaacctgtgagatgaaatatccacttgctgaatcaaaa |
42475733 |
T |
|
| Q |
239 |
tgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatatatgacaaagcagagaaaattttacaatgctcaaatgtctatttcaatttg |
338 |
Q |
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| T |
42475732 |
tgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatatacgacaaagcagagaaaattttacaatgctcaaatgtctatttcaatttg |
42475633 |
T |
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| Q |
339 |
acaaaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaatgatcatcaacatatttatcaaacaaatgatcaaacaggcaa |
438 |
Q |
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| T |
42475632 |
acaaaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaatgatcatcaacatatttatcaaacaaatgatcaaacaggcaa |
42475533 |
T |
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| Q |
439 |
catgtttaacaaacagctaaataatcatttagcaatcatatatcggttcagcacagagcttttaatgcattataaaaataggcaacatgtcccaactagc |
538 |
Q |
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| T |
42475532 |
catgtttaacaaacagctaaataatcatttagcaatcatatatcggttcagcactgagcttttaatgcattataaaaataggcaacatgtcccaactagc |
42475433 |
T |
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| Q |
539 |
tttttgagctatcagg |
554 |
Q |
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| T |
42475432 |
ttttcgagctatcagg |
42475417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 58 - 289
Target Start/End: Complemental strand, 42468499 - 42468267
Alignment:
| Q |
58 |
aaatcttcttgtctcctccttacagatatccaatccttcacatatatctgttttcatgcaaatat--taacctcctatatgtagaacttgcaaataagtt |
155 |
Q |
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| T |
42468499 |
aaatctttttgtctcctccttacagatatccattccttcacatatatctattttcatgcaaatatattaacctcctatatgtagaacttgcaaataagtt |
42468400 |
T |
|
| Q |
156 |
ttactctttaactcctgcagccaaagagcagtaacgattaactctaaacctgtgagatgaaatatccacttgctgaatcaaaatgctgcattcaaacata |
255 |
Q |
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|||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |
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| T |
42468399 |
ttactcatttactcctacagccaaagagcggtaacgattaactctaaacctgtgagatgaaatatccacttac-gaatcaaaatgctgcattcaaatata |
42468301 |
T |
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| Q |
256 |
gatatcttgttcaacaatgatcttcctccatata |
289 |
Q |
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| T |
42468300 |
gatatcttgttagacaatgatctttctccatata |
42468267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 342 - 480
Target Start/End: Complemental strand, 42481016 - 42480885
Alignment:
| Q |
342 |
aaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaatgatcatcaacatatttatcaaacaaat-gatcaaacaggcaaca |
440 |
Q |
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|||| |||||||||||||| | ||||||||||||||||||||||||| ||||| |||||| ||| ||| ||| | | |||||||||||||||| |
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| T |
42481016 |
aaacaaagatcaatttcccaagccctcatttgaaaataagatataaat-aataa-------tcaacagattgatccaaccatttgatcaaacaggcaaca |
42480925 |
T |
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| Q |
441 |
tgtttaacaaacagctaaataatcatttagcaatcatata |
480 |
Q |
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| T |
42480924 |
tgtttaacaaacagctaaataacgatttagcaatcatata |
42480885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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