View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0088_low_30 (Length: 276)

Name: NF0088_low_30
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0088_low_30
NF0088_low_30
[»] chr7 (4 HSPs)
chr7 (19-248)||(37370336-37370582)
chr7 (139-209)||(38836164-38836234)
chr7 (30-243)||(34483814-34484024)
chr7 (148-203)||(49094528-49094584)
[»] chr8 (3 HSPs)
chr8 (19-205)||(2611803-2611989)
chr8 (33-205)||(15795933-15796104)
chr8 (19-190)||(40318469-40318639)
[»] chr4 (3 HSPs)
chr4 (30-205)||(34160914-34161089)
chr4 (25-205)||(41309880-41310060)
chr4 (139-209)||(2049009-2049079)
[»] chr2 (2 HSPs)
chr2 (25-205)||(21203263-21203439)
chr2 (135-194)||(21949867-21949927)
[»] chr1 (11 HSPs)
chr1 (19-201)||(43699357-43699540)
chr1 (19-204)||(13129118-13129303)
chr1 (34-205)||(11084569-11084740)
chr1 (31-205)||(3525881-3526055)
chr1 (19-205)||(27491812-27491998)
chr1 (85-205)||(41114469-41114589)
chr1 (25-205)||(52316065-52316232)
chr1 (19-205)||(34106360-34106546)
chr1 (19-75)||(41114626-41114682)
chr1 (210-244)||(13129061-13129095)
chr1 (212-244)||(43699297-43699329)
[»] chr6 (1 HSPs)
chr6 (19-205)||(8859165-8859351)
[»] chr3 (1 HSPs)
chr3 (19-205)||(34466687-34466870)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 37370582 - 37370336
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||| |||     
T  37370582 gaagctaaagactatcctataacaacaaaactaagtgtagcctgccaataaagaatatggcttcaaatgtccctacagaaatctaatcagatatagcatc 37370483  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc------------- 205  Q
    ||||||||        |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||                 
T  37370482 tgtaaagcaaaaaagatgaatatcaaaatttcctaatcctctaatcatcatatttgggattgtttttgataacaccatgtttgaatcttgtattcatatt 37370383  T
Q  206 ----gagtcagtctcaataagatttgtagaggttttgtgtttttatt 248  Q
        |||||||||||||||||||||||||||||||||||||||||||    
T  37370382 atcagagtcagtctcaataagatttgtagaggttttgtgtttttatt 37370336  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 38836234 - 38836164
Alignment:
Q  139 tatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatcgagt 209  Q
    |||||||  ||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||| |||||    
T  38836234 tatcaaatcttcctaatcctctaatcacaatatttgggattgcttttgataacaccatttttggaacgagt 38836164  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 34484024 - 34483814
Alignment:
Q  30 ctatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaagcnnn 129  Q
    |||||||||||||||||||| ||||||| | ||||||  ||||||| | || || ||||| | | | ||||||||||||||| | ||| | | | |        
T  34484024 ctatcctatagcaacaaaacaaagtgtaacatgccaaggaagcataaggctgcacatgtctcaaaaaaaatctaatcagataaagcatctattatgtaaa 34483925  T
Q  130 nnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc-gagtcagtctcaataagatttgt 228  Q
         ||| |||||||||||| || |||| |||||| ||||| | ||||||||||||||||||||||||    ||| |||||| |||||||||||| |||    
T  34483924 atagatgagtatcaaaatttcatattcctctaatcaccatatctaggattgcttttgataacaccatgt----atcagagtcaatctcaataagatctgt 34483829  T
Q  229 agaggttttgtgttt 243  Q
    ||  |||||||||||    
T  34483828 agcagttttgtgttt 34483814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 49094528 - 49094584
Alignment:
Q  148 ttcctaatcctttaatcatca-tatttgggattgcttttgataacaccatgtttgga 203  Q
    ||||||||||| ||||||  | |||||||||||||||||||||||||| | ||||||    
T  49094528 ttcctaatcctctaatcacaaatatttgggattgcttttgataacaccttttttgga 49094584  T

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Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 2611803 - 2611989
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| |||||||| ||||||||||||||| |||||||||||| ||| |||| | || ||||||||| || |||| |||||||||||||| |||     
T  2611803 gaagccaaaggctatcctaaagcaacaaaactaagagtagcctgccaagaaaacatatggctgcatatgtccttaaagaattctaatcagatatagcatc 2611902  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||||||||        |||||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||    
T  2611903 tgtaaagcaaaaaagatgaatatcaaaatttcctaatccgctaatcaccatatttgagattgcttttgataacaccatgtttggatc 2611989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 15795933 - 15796104
Alignment:
Q  33 tcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaagcnnnnnn 132  Q
    ||||||||||||||||| |||||||||||||||  |||||||| | || || ||| ||||| ||||||||||||||||||||||| | | | ||          
T  15795933 tcctatagcaacaaaacaaagtgtagcctgccag-aaagcatagggctgcacatgcccctaaagaaatctaatcagatataacatctattatgcaacata 15796031  T
Q  133 nntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
      ||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  15796032 gatgagtaacgaaatttcctaatcctctaatcatcatatttgggattgcttttgataacatcatgtttggatc 15796104  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 40318469 - 40318639
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| |||||||||||||||||||| |||||||||||||||| |||||||| |  | || ||| || || |||| || ||||||||||| |||     
T  40318469 gaagccaaaggctatcctatagcaacaaaacaaagtgtagcctgccaagaaagcatagggttgcacatg-ccttaaagaattcaaatcagatatagcatc 40318567  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataa 190  Q
    | | | ||        ||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  40318568 tcttatgcaaaatagatgagtatcaaaatttcctaatcctctaatcaccatatttgggattacttttgataa 40318639  T

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Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 34160914 - 34161089
Alignment:
Q  30 ctatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaagcnnn 129  Q
    |||||||||||||||||||| ||||||| | |||||| |||||||| |  | || ||| ||||| ||||||||||||||||| | ||||||||||||       
T  34160914 ctatcctatagcaacaaaacaaagtgtaacttgccaagaaagcatagggttgcacatgcccctaaagaaatctaatcagataaagcatatgtaaagcaaa 34161013  T
Q  130 nnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
         ||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||    
T  34161014 atagatgagtatcaaaatttcctaatcctctaatcaccatatttaggattgcttttgataacaccatgtttggatc 34161089  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 41310060 - 41309880
Alignment:
Q  25 aaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaa 124  Q
    |||| ||| |||||||||||||||| |||||||||||||||| |||||||| | || || ||| ||||| |||| |||||||||||||| ||| ||| |     
T  41310060 aaaggctaccctatagcaacaaaacaaagtgtagcctgccaagaaagcatagggctgcacatgcccctaaagaattctaatcagatatagcatctgttat 41309961  T
Q  125 gcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||        ||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||    
T  41309960 gcaaaatagatgagtatcaaaatttcctaatcctctaatcaccatatttgggattgattttgattacaccatgtttggatc 41309880  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 2049079 - 2049009
Alignment:
Q  139 tatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatcgagt 209  Q
    |||||||  ||||||||||| ||||||  ||||||||||||||||||||||||||| | |||||| |||||    
T  2049079 tatcaaaccttcctaatcctctaatcacaatatttgggattgcttttgataacaccctttttggaacgagt 2049009  T

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Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 21203439 - 21203263
Alignment:
Q  25 aaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaa 124  Q
    |||| |||||||||||||||||||    |||||||||||||| ||||| || | || || ||||||||| |||| |||||||| ||||| ||| ||| ||    
T  21203439 aaaggctatcctatagcaacaaaa----gtgtagcctgccaagaaagcttatggctgcacatgtccctaaagaattctaatcatatatagcatgtgtgaa 21203344  T
Q  125 gcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||        |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21203343 gcaaaaaagatgaatatcaaaatttcctaatcctctaatcatcatatttgggattgcttttgataacaccatgtttggatc 21203263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 21949867 - 21949927
Alignment:
Q  135 tgaatatcaaaatttcctaatcctttaatcatca-tatttgggattgcttttgataacacc 194  Q
    |||||||||||  ||||||||||| ||||||  | |||||||||||||||||||| |||||    
T  21949867 tgaatatcaaatcttcctaatcctctaatcacaaatatttgggattgcttttgattacacc 21949927  T

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Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 43699540 - 43699357
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| |||||||||||||||||||||||||||||| |||||| |||||||| | || || ||||||||| |||| |||||| ||||||| |||     
T  43699540 gaagccaaaggctatcctatagcaacaaaactaagtgtagcttgccaagaaagcatatggctgcacatgtccctaaagaattctaataagatatagcatc 43699441  T
Q  119 tgtaaagcnnnnnnnn-tgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttg 201  Q
    |||||| |         |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||    
T  43699440 tgtaaaacaaaaaaagatgaatatcaaaatttcctaatcctctaatcaccatatttgggattgcttttaataacaccatgtttg 43699357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 13129303 - 13129118
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| ||| |||||||||||||||| |||||||||||||||| |||||||| | || || ||| ||||| |||| |||||||||||||| |||     
T  13129303 gaagccaaaggctaccctatagcaacaaaacaaagtgtagcctgccaagaaagcatagggctgcacatgcccctaaagaattctaatcagatatagcatc 13129204  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggat 204  Q
    ||| | ||        ||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||||    
T  13129203 tgttatgcaaaataaatgagtatcaaaatttcctaatcctctaatcaccatatttgggattgattttgatgacaccatgtttggat 13129118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 11084740 - 11084569
Alignment:
Q  34 cctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaagcnnnnnnn 133  Q
    |||||||||||||||| |||||||||||||||| |||||||| |||| || ||| ||||| |||| |||||||||||||| ||| ||| | ||           
T  11084740 cctatagcaacaaaacaaagtgtagcctgccaagaaagcataggactgcacatgcccctaaagaattctaatcagatatagcatctgttatgcaaaatag 11084641  T
Q  134 ntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
     ||| ||||||||||||||||||||  ||||| ||||||| |||||| ||||||| ||||||||||||||||    
T  11084640 atgagtatcaaaatttcctaatcctccaatcaccatatttaggattgattttgatgacaccatgtttggatc 11084569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 3526055 - 3525881
Alignment:
Q  31 tatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaagcnnnn 130  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||||   || || ||| ||||| ||||||||||||| ||||| ||||||| | ||        
T  3526055 tatcctatagcaacaaaacaaagtgtaacctgccaagaaagcatagagctgcacatgcccctaaagaaatctaatcaaatatagcatatgttatgcaaaa 3525956  T
Q  131 nnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
        ||| |||||||||||||| ||||| |||||| ||||| | |||||||||||||||||||||||||||||||    
T  3525955 tagatgagtatcaaaatttcctgatcctctaatcaccatatctaggattgcttttgataacaccatgtttggatc 3525881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 27491998 - 27491812
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| |||||||||||||||||| | ||||||||||| | || |||||||| | || || |||||  || |||| |||||||||||||| |||     
T  27491998 gaagccaaaggctatcctatagcaacaaagcaaagtgtagcctactaagaaagcatagggctgcacatgtctttaaagaagtctaatcagatatagcatc 27491899  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||| | ||        ||| ||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||| |||||||||    
T  27491898 tgttatgcaaaatagatgagtatcaaaattttctaatcctctaatcaccatatttggggttgcttttgataacaccaagtttggatc 27491812  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 41114589 - 41114469
Alignment:
Q  85 atgtccctacagaaatctaatcagatataacatatgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttt 184  Q
    ||||||||| |||| |||||||||||||| ||| |||||| |        |||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  41114589 atgtccctaaagaattctaatcagatatagcatctgtaaaacaaaaaagttgaatatcaaaatttcctaatcctctaatcaccatatttgggattacttt 41114490  T
Q  185 tgataacaccatgtttggatc 205  Q
    |||||||||||| ||||||||    
T  41114489 tgataacaccatatttggatc 41114469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 52316232 - 52316065
Alignment:
Q  25 aaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacatatgtaaa 124  Q
    |||| |||||||||||||||||||| ||||||| | |||||| |||||||| | || || ||| ||||| |||||| |||||||||| | ||| ||| |     
T  52316232 aaaggctatcctatagcaacaaaacaaagtgtaacttgccaagaaagcatagggctgcacatgcccctaaagaaatataatcagataaagcatttgttat 52316133  T
Q  125 gcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||             ||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||    
T  52316132 gc-------------atcaaaatttcctaatcctctaatcaccatatctaggattgcttttgataacaccatgtttggatc 52316065  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 34106360 - 34106546
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| ||| |||||||||||||||  |||| || |||||||| |||||||| |  | || ||| || || |||| ||||||||||||||||||     
T  34106360 gaagccaaaggctaccctatagcaacaaaataaagtataacctgccaagaaagcatagggttgcacatgcccttaaagaattctaatcagatataacatc 34106459  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||| | ||        ||| ||| |||| ||| ||||||| |||||  |||||||||||||| ||||||| ||||||||||||||||    
T  34106460 tgttatgcaaaatagatgagtataaaaaattcataatcctctaatccccatatttgggattgattttgatgacaccatgtttggatc 34106546  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 41114682 - 41114626
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcata 75  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  41114682 gaagccaaaggctatcctatagcaacaaaactaagtgtagcctgccaagaaagcata 41114626  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 13129095 - 13129061
Alignment:
Q  210 cagtctcaataagatttgtagaggttttgtgtttt 244  Q
    ||||||||||||||| |||||||||||||||||||    
T  13129095 cagtctcaataagatctgtagaggttttgtgtttt 13129061  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 43699329 - 43699297
Alignment:
Q  212 gtctcaataagatttgtagaggttttgtgtttt 244  Q
    ||||||||||||| |||||||||||||||||||    
T  43699329 gtctcaataagatctgtagaggttttgtgtttt 43699297  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 8859351 - 8859165
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| ||||||||||| |||||||| ||||||||||| |||| |||||||| | || || ||| |||||  |||||||||| ||||||| |||     
T  8859351 gaagccaaaggctatcctatagaaacaaaacaaagtgtagcctaccaagaaagcatagggctgcacatgcccctaatgaaatctaataagatatagcatc 8859252  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||| | ||        | | |||||||||||||||||||| ||||||  |||| | |||||||||||||||||||||||||||||||    
T  8859251 tgttatgcaaaataaataagtatcaaaatttcctaatcctctaatcacaatatctaggattgcttttgataacaccatgtttggatc 8859165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 34466687 - 34466870
Alignment:
Q  19 gaagctaaagactatcctatagcaacaaaactaagtgtagcctgccaataaagcatacgacttcatatgtccctacagaaatctaatcagatataacata 118  Q
    ||||| |||| |||||||||| ||||||||   |||||||||||| |  ||||||||   || || ||| ||||| ||||||||||| ||||||| |||     
T  34466687 gaagccaaaggctatcctataacaacaaaa---agtgtagcctgctatgaaagcatagagctgcacatgcccctaaagaaatctaattagatatagcatc 34466783  T
Q  119 tgtaaagcnnnnnnnntgaatatcaaaatttcctaatcctttaatcatcatatttgggattgcttttgataacaccatgtttggatc 205  Q
    ||| | ||        ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||    
T  34466784 tgttatgcaaaatagatgagtatcaaaatttcctaatcctctaatcaccatatttgggattgcttttgataacatcatgtttggatc 34466870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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