View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0088_low_31 (Length: 268)
Name: NF0088_low_31
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 42311856 - 42311630
Alignment:
| Q |
29 |
acatttttgtatgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggctgaatataacaag |
128 |
Q |
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| T |
42311856 |
acatttttgtatgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggctgaatataacaag |
42311757 |
T |
|
| Q |
129 |
gtctatcaacgccttggagttcatttggaggaaaaggtaagggttctagctagtttcttttgaatctcccatgtggaattccttatcccttttctgttct |
228 |
Q |
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| T |
42311756 |
gtctatcgacgccttggagttcatttggaggaaaaggtaatggtt----ctagtttcttttgaatctcccatgaggaattccttatcccttttctgttct |
42311661 |
T |
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| Q |
229 |
tttaatttagtgttgggcctcttagaattat |
259 |
Q |
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| T |
42311660 |
tttaatttagtgttgggcctcttagaattat |
42311630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 51566513 - 51566658
Alignment:
| Q |
32 |
tttttgtatgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggctgaatataacaaggtc |
131 |
Q |
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| T |
51566513 |
tttttgtctgcctgaattttgatttcagggaggggatcccaagtatcgcacggcatggaaacaaatttgtgatgttagtaggactgaatttaacaaggtc |
51566612 |
T |
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| Q |
132 |
tatcaacgccttggagttcatttggaggaaaaggtaagggttctag |
177 |
Q |
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| T |
51566613 |
tatcaacgccttggaattcgtttggaggaaatggtaaggattctag |
51566658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 47976299 - 47976151
Alignment:
| Q |
32 |
tttttgtatgcctgaattttgatttcagagagggga---tcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggctgaatataacaag |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| | ||||||| || |||||||| |||||| ||||||| |
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| T |
47976299 |
tttttgtatgcctgaattttgatttcagagtggggaggatcccaagtatcgcacggcatggaaacaaatttgcgatattagtaggactgaatttaacaag |
47976200 |
T |
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| Q |
129 |
gtctatcaacgccttggagttcatttggaggaaaaggtaagggttctag |
177 |
Q |
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|||||||| ||||||||| | | ||||||||||| |||||||||||||| |
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| T |
47976199 |
gtctatcagcgccttggaatccgtttggaggaaatggtaagggttctag |
47976151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 34030367 - 34030507
Alignment:
| Q |
37 |
gtatgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggctgaatataacaaggtctatca |
136 |
Q |
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|||||| | |||||| || |||||| |||||| ||| ||||||| | |||||||| |||||||||| ||||||||||||| | | ||||||||||||| |
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| T |
34030367 |
gtatgcattaatttttatctcagagtggggataccaggtatcgcaaggcatggcaacaaatttgtgatattagtagggctgagtttgacaaggtctatca |
34030466 |
T |
|
| Q |
137 |
acgccttggagttcatttggaggaaaaggtaagggttctag |
177 |
Q |
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||| ||||||||||| ||||||||| |||||||||||||| |
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| T |
34030467 |
acgtcttggagttcaactggaggaaatggtaagggttctag |
34030507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 5076254 - 5076347
Alignment:
| Q |
84 |
gcatggcataaaatttgtgaagttagtagggctgaatataacaaggtctatcaacgccttggagttcatttggaggaaaaggtaagggttctag |
177 |
Q |
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|||||||| |||||||||| |||||||||||||| | ||||| |||||||| | |||||||||| |||||||||| |||||||| ||||| |
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| T |
5076254 |
gcatggcaacaaatttgtgatgttagtagggctgagttcgacaagatctatcaatgtattggagttcaattggaggaaatggtaaggggtctag |
5076347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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