View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0088_low_36 (Length: 255)
Name: NF0088_low_36
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 3418087 - 3417867
Alignment:
| Q |
30 |
atcaacacatatatatttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3418087 |
atcaacacatatatatttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaa |
3417988 |
T |
|
| Q |
130 |
gatctattgaccaatcaatcaatgtatatatataaagtttgaaagnnnnnnnnnnnnacatcaattttggattacggattcacatcaattctggatttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3417987 |
gatctattgaccaatcaatcaatgtatatatataaagtttaaaag-tttttttttttacatcaattttggattacggattcacatctattctggatttgt |
3417889 |
T |
|
| Q |
230 |
tgttcacatagaataatctacc |
251 |
Q |
| |
|
|||||||||||||||| ||||| |
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|
| T |
3417888 |
tgttcacatagaataaactacc |
3417867 |
T |
|
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Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 19068019 - 19068163
Alignment:
| Q |
30 |
atcaacacatatatatttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19068019 |
atcaacacatatatatttgtgactaaaattccccaacgtgtattcaaccattgagataattactccattaaaattcaatatttgggagcttttcttgtaa |
19068118 |
T |
|
| Q |
130 |
gatctattgaccaatcaatcaatgtatatatataaagtttgaaag |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19068119 |
gatctattgaccaatcaatcaatgtatatatataaagtttgaaag |
19068163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 4085585 - 4085441
Alignment:
| Q |
30 |
atcaacacatatatatttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4085585 |
atcaacacatatatatttgtgactaaaattccccaacgtgtattcaaccactaagataattactccattaaaattcaatatttgggagcttttcttgtaa |
4085486 |
T |
|
| Q |
130 |
gatctattgaccaatcaatcaatgtatatatataaagtttgaaag |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4085485 |
gatctattgaccaatcaatcaatgtatatatataaagtttgaaag |
4085441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 4085429 - 4085389
Alignment:
| Q |
211 |
acatcaattctggatttgttgttcacatagaataatctacc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4085429 |
acatcaattctggatttgttgttcacatagaataaactacc |
4085389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 41787203 - 41787278
Alignment:
| Q |
41 |
tatatttgt-gactaaaattccccaacgtgtatt---caactactgagataattactccattaaaattcaatattt |
112 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| |||| ||||||||||||| |||||| |||||||| |||| |
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|
| T |
41787203 |
tatatttgttgactaaaattccccaaagtgtattcaacaaccactgagataattattccattgaaattcaaaattt |
41787278 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 34308892 - 34308758
Alignment:
| Q |
40 |
atatatttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaagatctattga |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34308892 |
atatatttgtgactaaaattccccaacgtgtattcaaccactgagataattactccattaaaattcaatatttgagagcttttcttgtaagatctattga |
34308793 |
T |
|
| Q |
140 |
ccaatcaatcaatgtatatatataaagtttgaaag |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
34308792 |
ccaatcaatcaatgtatatatataaagtttgaaag |
34308758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 49090276 - 49090134
Alignment:
| Q |
30 |
atcaacacatatatatttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaatatttgggagcttttcttgtaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49090276 |
atcaacacatatatatttgtgactaaaattccccaacgtgtattcaaccactgggacaattactccattaaaattcaatatttgggagcttttcttgtaa |
49090177 |
T |
|
| Q |
130 |
gatctattgaccaatcaatcaatgtatatatataaagtttgaaag |
174 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49090176 |
gatctatggaccaatcaatcaa--tatatatataaagtttgaaag |
49090134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 46917556 - 46917486
Alignment:
| Q |
37 |
catatatatttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaa |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||| ||||||| |||| |||||| |||||||| |
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|
| T |
46917556 |
catatatatttgtgattaaaattccccaacatgtattcaaccactgagacaattgttccattgaaattcaa |
46917486 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 19654420 - 19654494
Alignment:
| Q |
33 |
aacacatatatatttgtgactaaaattccccaacgtgtattcaactactgagataattactccattaaaattcaa |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||| |||||| |||||||| |
|
|
| T |
19654420 |
aacacatatatatttgtgattaaaattccccaacgtgtattcaaccaccgagacaattattccattgaaattcaa |
19654494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 12345635 - 12345671
Alignment:
| Q |
209 |
tcacatcaattctggatttgttgttcacatagaataa |
245 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12345635 |
tcacaacaattctggatttgttgttcacatagaataa |
12345671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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