View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0088_low_40 (Length: 235)
Name: NF0088_low_40
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 1729996 - 1730192
Alignment:
| Q |
22 |
aacccttcaacaatttcaaatgttcttaaggagtagccaaacatgaacggaagtggatacaccaaatccaaacaccaaccatgtctctgtctgtctcctc |
121 |
Q |
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| T |
1729996 |
aacccttcaacaatttcaaatgttcttaaggagtagccaaacatgaaccgaagtggatacaccaaatccaaacaccaaccatgtctctgtctgtctcctc |
1730095 |
T |
|
| Q |
122 |
accaggattactaactcttacccccatattcacacccacacccccctcttcactttcaatttctaagacacactccattaaaatcactgtttcatct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1730096 |
accaggattactaactcttacccccatattcacacccacacccccctcttcactttcaatttctaagacacactccattaaaatcactgtttcatct |
1730192 |
T |
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