View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0088_low_5 (Length: 455)

Name: NF0088_low_5
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0088_low_5
NF0088_low_5
[»] chr4 (10 HSPs)
chr4 (29-391)||(39082167-39082529)
chr4 (61-391)||(39087853-39088183)
chr4 (50-385)||(39091233-39091568)
chr4 (40-391)||(39070774-39071125)
chr4 (87-277)||(39097556-39097746)
chr4 (216-264)||(7615241-7615289)
chr4 (55-152)||(39080265-39080362)
chr4 (216-255)||(7637055-7637094)
chr4 (216-254)||(7656227-7656265)
chr4 (86-151)||(39075094-39075159)
[»] scaffold0190 (1 HSPs)
scaffold0190 (119-255)||(4356-4492)
[»] chr8 (2 HSPs)
chr8 (185-255)||(15745030-15745100)
chr8 (156-207)||(15196291-15196342)
[»] chr7 (1 HSPs)
chr7 (211-264)||(8936172-8936225)
[»] chr3 (1 HSPs)
chr3 (222-255)||(40147454-40147487)
[»] chr6 (1 HSPs)
chr6 (219-255)||(6500493-6500529)


Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 29 - 391
Target Start/End: Original strand, 39082167 - 39082529
Alignment:
Q  29 aaatagccagaaaaaataccagtcagattacttagaactaggaaccaaggactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaact 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082167 aaatagccagaaaaaataccagtcagattacttagaactaggaaccaagaactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaact 39082266  T
Q  129 tcaatatcaatgctaccttcttcagctccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggcttcccccaac 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082267 tcaatatcaatgctaccttcttcagctccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggcttcccccaac 39082366  T
Q  229 caaaatcattaccataaacatcaaacctctgagaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaa 328  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39082367 caaaatcattaccataaacatcaaacctctgagaactactcgtcgccaatgaattgctacctgccaaattaccaacttcaaataacttcggcattctcaa 39082466  T
Q  329 ccaatactcataatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctc 391  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39082467 ccaacactcataatcatcccttattttctcatcagaacgcaacataatcatcttgttcatctc 39082529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 61 - 391
Target Start/End: Original strand, 39087853 - 39088183
Alignment:
Q  61 tagaactaggaaccaaggactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctaccttcttcagctccagc 160  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  39087853 tagaactaggaaccatgaactcagcatcatttcccaaagcctccaaaatctcataagaaagacaaacttcaatatcaatgctaccttcgtcagctccagc 39087952  T
Q  161 atacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcattaccataaacatcaaacctctga 260  Q
    | |||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||  ||    
T  39087953 aaacacagtaatcttcccattacttttattcgcacccccgcttcgaacccctacaggcttcccccaaccaaaatcattatcataaacatcaaaccttgga 39088052  T
Q  261 gaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaaccaatactcataatcatcccttattttctcat 360  Q
    |||| |||||| |||||||||||   |||||||||| ||  |||  |||| ||||| |||||| |||||||| |||||||||||||||||||||||||||    
T  39088053 gaactactcgtagccaatgaattagcacctgccaaactattaatcccaaacaactttggcattttcaaccaacactcataatcatcccttattttctcat 39088152  T
Q  361 cagaatgcaacataatcatcttgttcatctc 391  Q
    ||||| | |||||||||||||||||||||||    
T  39088153 cagaacgtaacataatcatcttgttcatctc 39088183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 50 - 385
Target Start/End: Original strand, 39091233 - 39091568
Alignment:
Q  50 gtcagattacttagaactaggaaccaaggactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctaccttct 149  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||  |||||||||||||||||| ||| ||||||||||||    
T  39091233 gtcacattacttagaactaggaaccaagaactcagcatcatttcccaaagcctccaaaatctcataagaaagacaaacttcaacatctatgctaccttct 39091332  T
Q  150 tcagctccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcattaccataaacat 249  Q
    ||| | |||||| |||| |||||||| |||||| | ||||| | ||| || | || |||||| || |||||||||||||||||||||||||| |||||||    
T  39091333 tcaaccccagcaaacacggtaatctttccattattcttattcgcacctccgcatctaacccccacaggcttcccccaaccaaaatcattaccgtaaacat 39091432  T
Q  250 caaacctctgagaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaaccaatactcataatcatccct 349  Q
    |||||||| |||||| ||| ||  |||| | ||| | ||| | ||||  | ||||  |||| | ||||||||||||||||||| ||||||| | ||||||    
T  39091433 caaacctcggagaactacttgttcccaacgtattaccacccgtcaaaacatcaatcccaaaaatcttcggcattctcaaccaacactcatagtaatccct 39091532  T
Q  350 tattttctcatcagaatgcaacataatcatcttgtt 385  Q
    ||||||||||||||||||  ||||||||||||||||    
T  39091533 tattttctcatcagaatgtgacataatcatcttgtt 39091568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 40 - 391
Target Start/End: Original strand, 39070774 - 39071125
Alignment:
Q  40 aaaaataccagtcagattacttagaactaggaaccaaggactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaat 139  Q
    |||| ||| ||||| ||||||||||| | ||||||||| ||||  |||||||| ||||||||||||| |||||  |||||||||||| ||||| ||| ||    
T  39070774 aaaattacaagtcacattacttagaaattggaaccaagaactcaacatcatttgccaaagcctccaaaatctcataagaaagacaaatttcaacatctat 39070873  T
Q  140 gctaccttcttcagctccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcatta 239  Q
     |||||||||||||| |||||| | ||| |||| || |||||| | |||||   || ||||||||||||| | || ||||| ||||| |||||||||||     
T  39070874 actaccttcttcagcaccagcaaaaacactaatttttccattattcttattaccactcccacttcgaaccgccactggctttccccagccaaaatcattg 39070973  T
Q  240 ccataaacatcaaacctctgagaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaaccaatactcat 339  Q
    ||| |||||||||||||| ||||||  ||  | |||||   ||| | ||||  | || ||||| |||  || ||| |  |  ||||||||||| |||| |    
T  39070974 ccaaaaacatcaaacctcggagaactgctgattgccaacttattaccacctagcgaactaccactttggaacaacctgcgtgttctcaaccaagactcgt 39071073  T
Q  340 aatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctc 391  Q
    |||  | ||||||||||||||||||||| |||| |||||||||||| |||||    
T  39071074 aatggttccttattttctcatcagaatgtaacaaaatcatcttgtttatctc 39071125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 87 - 277
Target Start/End: Original strand, 39097556 - 39097746
Alignment:
Q  87 tcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctaccttcttcagctccagcatacacagtaatcttcccattacttt 186  Q
    |||||||||| ||||||||| || ||  ||||||| |||||||||| |||||| |||||||||||    |||  | ||| ||| ||| | |||| |||||    
T  39097556 tcatttcccatagcctccaaaatatcataagaaaggcaaacttcaacatcaatactaccttcttctatcccactaaacatagttatcgttccatcacttt 39097655  T
Q  187 tatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcattaccataaacatcaaacctctgagaaccactcgtcgccaa 277  Q
    |||||| ||||||||||| |||  | || ||||| ||||||||||| |||||||||||||||||||||||  |||||| ||| || |||||    
T  39097656 tatttgcacccccacttctaacagcaacaggcttaccccaaccaaagtcattaccataaacatcaaaccttggagaactactagttgccaa 39097746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 7615241 - 7615289
Alignment:
Q  216 ggcttcccccaaccaaaatcattaccataaacatcaaacctctgagaac 264  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  7615241 ggctttccccaaccaaaatcattaccataaacatcaaaccacggagaac 7615289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 39080265 - 39080362
Alignment:
Q  55 attacttagaactaggaaccaaggactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctaccttcttca 152  Q
    ||||||||||||  ||||||| | |||| | ||||||||||||||||||||| || ||  ||||||||||||  |||| ||  || ||||||||||||    
T  39080265 attacttagaacatggaaccatgaactcagtatcatttcccaaagcctccaaaatttcataagaaagacaaagctcaacatttatactaccttcttca 39080362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 7637055 - 7637094
Alignment:
Q  216 ggcttcccccaaccaaaatcattaccataaacatcaaacc 255  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  7637055 ggctttccccatccaaaatcattaccataaacatcaaacc 7637094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 7656265 - 7656227
Alignment:
Q  216 ggcttcccccaaccaaaatcattaccataaacatcaaac 254  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  7656265 ggctttccccatccaaaatcattaccataaacatcaaac 7656227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 39075094 - 39075159
Alignment:
Q  86 atcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctaccttcttc 151  Q
    ||||||||||| ||||||||| || ||  ||| ||||||||||| ||||||||  |||||||||||    
T  39075094 atcatttcccatagcctccaaaatatcataaggaagacaaacttgaatatcaacactaccttcttc 39075159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 4356 - 4492
Alignment:
Q  119 aagacaaacttcaatatcaatgctaccttcttcagctccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggc 218  Q
    |||||| |||||||  || |||||||| |||||  | || |||||||||  |||||| ||||| ||||||||||||||||||||||||||||| || ||     
T  4356 aagacatacttcaaggtccatgctaccatcttctacacctgcatacacataaatctttccatttcttttatttgaacccccacttcgaacccccacaggt 4455  T
Q  219 ttcccccaaccaaaatcattaccataaacatcaaacc 255  Q
    || ||||||||||||||||||||||||||||||||||    
T  4456 tttccccaaccaaaatcattaccataaacatcaaacc 4492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 15745100 - 15745030
Alignment:
Q  185 tttatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcattaccataaacatcaaacc 255  Q
    |||||||| ||||||| |||||||||| || || || ||||||||||||||||| ||||||||||||||||    
T  15745100 tttatttgcacccccagttcgaacccccacaggttttccccaaccaaaatcattgccataaacatcaaacc 15745030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 15196342 - 15196291
Alignment:
Q  156 ccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaa 207  Q
    |||||| ||||| ||||||| |||||||||||||||||||  ||||||||||    
T  15196342 ccagcaaacacactaatctttccattacttttatttgaactaccacttcgaa 15196291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 8936225 - 8936172
Alignment:
Q  211 ctaccggcttcccccaaccaaaatcattaccataaacatcaaacctctgagaac 264  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||| | ||||||    
T  8936225 ctacaggctttccccatccaaaatcattaccataaacatcaaaccacggagaac 8936172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 40147487 - 40147454
Alignment:
Q  222 ccccaaccaaaatcattaccataaacatcaaacc 255  Q
    ||||| ||||||||||||||||||||||||||||    
T  40147487 ccccatccaaaatcattaccataaacatcaaacc 40147454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 6500493 - 6500529
Alignment:
Q  219 ttcccccaaccaaaatcattaccataaacatcaaacc 255  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  6500493 ttcccccatccaaaatcattaccataaatatcaaacc 6500529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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