View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0088_low_7 (Length: 388)
Name: NF0088_low_7
Description: NF0088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0088_low_7 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 36 - 388
Target Start/End: Complemental strand, 42475769 - 42475417
Alignment:
| Q |
36 |
aacctgtgagatgaaatatccacttgctgaatcaaaatgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatatatgacaaagcaga |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42475769 |
aacctgtgagatgaaatatccacttgctgaatcaaaatgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatatacgacaaagcaga |
42475670 |
T |
|
| Q |
136 |
gaaaattttacaatgctcaaatgtctatttcaatttgacaaaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaatgatc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42475669 |
gaaaattttacaatgctcaaatgtctatttcaatttgacaaaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaatgatc |
42475570 |
T |
|
| Q |
236 |
atcaacatatttatcaaacaaatgatcaaacaggcaacatgtttaacaaacagctaaataatcatttagcaatcatatatcggttcagcacagagctttt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42475569 |
atcaacatatttatcaaacaaatgatcaaacaggcaacatgtttaacaaacagctaaataatcatttagcaatcatatatcggttcagcactgagctttt |
42475470 |
T |
|
| Q |
336 |
aatgcattataaaaataggcaacatgtcccaactagctttttgagctatcagg |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42475469 |
aatgcattataaaaataggcaacatgtcccaactagcttttcgagctatcagg |
42475417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 42468353 - 42468267
Alignment:
| Q |
36 |
aacctgtgagatgaaatatccacttgctgaatcaaaatgctgcattcaaacatagatatcttgttcaacaatgatcttcctccatata |
123 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
42468353 |
aacctgtgagatgaaatatccacttac-gaatcaaaatgctgcattcaaatatagatatcttgttagacaatgatctttctccatata |
42468267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 42481016 - 42480885
Alignment:
| Q |
176 |
aaaccaagatcaatttccccaatcctcatttgaaaataagatataaatgaataaatgatcatcaacatatttatcaaacaaat-gatcaaacaggcaaca |
274 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||||||||||||| ||||| |||||| ||| ||| ||| | | |||||||||||||||| |
|
|
| T |
42481016 |
aaacaaagatcaatttcccaagccctcatttgaaaataagatataaat-aataa-------tcaacagattgatccaaccatttgatcaaacaggcaaca |
42480925 |
T |
|
| Q |
275 |
tgtttaacaaacagctaaataatcatttagcaatcatata |
314 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42480924 |
tgtttaacaaacagctaaataacgatttagcaatcatata |
42480885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1627 times since January 2019
Visitors: 1303