View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0089_high_3 (Length: 365)
Name: NF0089_high_3
Description: NF0089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0089_high_3 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 95 - 352
Target Start/End: Original strand, 35991460 - 35991715
Alignment:
| Q |
95 |
aagtcattgcccagtaatgcacctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgcccata |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35991460 |
aagtcattgcccagtaatgcacctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgtccata |
35991559 |
T |
|
| Q |
195 |
tgtgtatatataatattttttggtgatgtgatgataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagggatattccaagta |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35991560 |
tgtgtatatataatattttttggtgatgtgattataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagggatattccaagca |
35991659 |
T |
|
| Q |
295 |
catcctacgttgagcaactagtaattcttacaaataaagtggaattcatcttgtgcct |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
35991660 |
catcctacgttgagcaactagtaattcttacaaataaagtgg--tccatcttgtgcct |
35991715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 94 - 328
Target Start/End: Original strand, 35980705 - 35980933
Alignment:
| Q |
94 |
aaagtcattgcccagtaatgcacctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgcccat |
193 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| | | |||||||||||||| ||| ||||| |||||||||||||||||| |||| | | |
|
|
| T |
35980705 |
aaagtcattgcccagtaatgcacttacacatgagtactatac-tccttaacaagctttatt----gattggttgatgatgaacaatttcacggtgttctt |
35980799 |
T |
|
| Q |
194 |
atgtgtatatataatattttttggtgatgtgat-gataactaaaaacttacacagacatgcatgca-cacatatg-cataataagccaagggatattcca |
290 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||| ||||| ||||||| ||||||||||||||| || || |||| |||||||| |||||||||| |
|
|
| T |
35980800 |
atgtgtatttatagtatttgttggtgatgtgattgataaataaaaac----acagacatgcatgcagcaactagcacatattaagccaaaggatattcca |
35980895 |
T |
|
| Q |
291 |
agtacatcctacgttgagcaactagtaattcttacaaa |
328 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35980896 |
agtacatcctatgttgagcaactagtaattcttacaaa |
35980933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 12325365 - 12325434
Alignment:
| Q |
199 |
tatatataatattttttggtgatgtg-atgataactaaaaacttacacagacatgcatgcacacatatgca |
268 |
Q |
| |
|
|||| ||||||||||||||| || || ||||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
12325365 |
tatagataatattttttggtaatatggatgataactaacaacttacatagaca-gcatgcacacatatgca |
12325434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 47543 - 47625
Alignment:
| Q |
199 |
tatatataatattttttggtgatgtg-atgataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagg |
281 |
Q |
| |
|
|||| ||||||||||||| | || || ||||||||||| |||||||| ||||| ||||||||||||||||| || |||| |||| |
|
|
| T |
47543 |
tatagataatattttttgataatatggatgataactaacaacttacatagaca-gcatgcacacatatgcagaagaagctaagg |
47625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1091 times since January 2019
Visitors: 1291