View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0089_low_1 (Length: 593)

Name: NF0089_low_1
Description: NF0089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0089_low_1
NF0089_low_1
[»] chr6 (19 HSPs)
chr6 (29-582)||(2088182-2088735)
chr6 (33-279)||(2097733-2097986)
chr6 (33-279)||(2106220-2106475)
chr6 (157-273)||(2041895-2042016)
chr6 (186-279)||(2054007-2054100)
chr6 (388-521)||(2098319-2098451)
chr6 (71-279)||(2136276-2136485)
chr6 (186-264)||(2047446-2047524)
chr6 (388-521)||(2106779-2106909)
chr6 (417-552)||(2054364-2054499)
chr6 (195-264)||(2058127-2058196)
chr6 (35-87)||(2053846-2053898)
chr6 (37-85)||(2062385-2062433)
chr6 (56-107)||(2036759-2036810)
chr6 (164-202)||(2082466-2082504)
chr6 (422-508)||(2102603-2102689)
chr6 (37-90)||(2047292-2047345)
chr6 (391-440)||(2065558-2065607)
chr6 (417-453)||(2058333-2058369)
[»] chr2 (1 HSPs)
chr2 (422-508)||(39182998-39183084)


Alignment Details
Target: chr6 (Bit Score: 538; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 29 - 582
Target Start/End: Original strand, 2088182 - 2088735
Alignment:
Q  29 attgttgagtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagctatactgcgttctgaaaatgggaatgtggtaccaactttactca 128  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088182 attgttgagtttgatggcgcatcgcgtggaaatcccggaccagctggtgcaggagctatactgcgttctgaaaatgggaatgtggtaccaactttactca 2088281  T
Q  129 acaattcatctgagctttatattatatgttatttgtaaaatgtagctaactcttatgtttctttgtagctctatcgattccgtgaaggattgggctacca 228  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2088282 acaattcatctgagctttatattatatgttatttataaaatgtagctaacccttatgtttctttgtagctctatcgattccgtgaaggattaggctacca 2088381  T
Q  229 aacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagccatccgaaaaggatatcatcacatcgctatcaaaggggactctgagcta 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088382 aacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagccatccgaaaaggatatcatcacatcgctatcaaaggggactctgagcta 2088481  T
Q  329 gttgtcaaccaggtttgttctattatatgctgctgaggttatatattatggagctgattcatttttcttttctaaacaatatactaagatatgttattgg 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088482 gttgtcaaccaggtttgttctattatatgctgctgaggttatatattatggagctgattcatttttcttttctaaacaatatactaagatatgttattgg 2088581  T
Q  429 ttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaagggtgactttcactcatgcac 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088582 ttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaagggtgactttcactcatgcac 2088681  T
Q  529 catccaacacattcgcagggtatttatttagcgatttagcgctttattgttcat 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088682 catccaacacattcgcagggtatttatttagcgatttagcgctttattgttcat 2088735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 33 - 279
Target Start/End: Original strand, 2097733 - 2097986
Alignment:
Q  33 ttgagtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagctatactgcgttctgaaaatgggaatgtggtaccaactttactcaacaa 132  Q
    ||||||||||||| ||| || | || |||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||| | ||||    ||||||    
T  2097733 ttgagtttgatggtgcagccagcgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagtctggtatctacttggtgcaacaa 2097832  T
Q  133 ttcatctgagctttatattatatg--ttatttgtaaaatgtagct-----aactcttatgtttctttgtagctctatcgattccgtgaaggattgggcta 225  Q
    ||||| |   | ||||||||||    |||||| ||||||||||||     ||||||||||||||||||||||||||||||||||| |||||| | || ||    
T  2097833 ttcatttagacattatattatactatttatttataaaatgtagctaagctaactcttatgtttctttgtagctctatcgattccgcgaaggacttggtta 2097932  T
Q  226 ccaaacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagc 279  Q
     ||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  2097933 tcaaacaaataatgttgctgagtatcgcgcattgattttaggactgaaacaagc 2097986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 33 - 279
Target Start/End: Original strand, 2106220 - 2106475
Alignment:
Q  33 ttgagtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagctatactgcgttctgaaaatgggaatgtggtaccaactttactcaacaa 132  Q
    ||||||||||||| ||| || |||| |||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||| | |||||   ||||||    
T  2106220 ttgagtttgatggtgcagccagtgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagtctggtatctactttgtgcaacaa 2106319  T
Q  133 ttcatctgagctttatattatatg--ttatttgtaaaatgtagctaa-----ctcttat--gtttctttgtagctctatcgattccgtgaaggattgggc 223  Q
    ||||| ||  | ||||||||||    |||||| ||||||||||||||     |||||||  |||||||||||||||||||||||||| |||||| | ||     
T  2106320 ttcatttggacattatattatactatttatttataaaatgtagctaagctaactcttatatgtttctttgtagctctatcgattccgcgaaggacttggt 2106419  T
Q  224 taccaaacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagc 279  Q
    || |||||||||||||||||||||||||| ||  ||||||||||| ||||||||||    
T  2106420 tatcaaacaaataatgttgctgagtatcgtgcactgattttaggactgaaacaagc 2106475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 2041895 - 2042016
Alignment:
Q  157 ttatttgtaaaatgtagctaactcttatgtttctttg-----tagctctatcgattccgtgaaggattgggctaccaaacaaataatgttgctgagtatc 251  Q
    |||||| |||||||||||||||||||||||||||||      ||||| |||| |||||| |||||| ||||||| |||||||||||||||||||||||||    
T  2041895 ttatttataaaatgtagctaactcttatgtttcttttcttcatagctatatcaattccgagaaggactgggctatcaaacaaataatgttgctgagtatc 2041994  T
Q  252 gcgctttgattttaggaatgaa 273  Q
    |||||||||| |||||| ||||    
T  2041995 gcgctttgatcttaggattgaa 2042016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 2054007 - 2054100
Alignment:
Q  186 tttctttgtagctctatcgattccgtgaaggattgggctaccaaacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagc 279  Q
    |||||| | ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||| || ||| ||||||||||    
T  2054007 tttcttcgcagctctatcgattccgtgaaggactgggctatcaaacaaataacgttgctgagtaccgcgctttgatattgggactgaaacaagc 2054100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 521
Target Start/End: Original strand, 2098319 - 2098451
Alignment:
Q  388 catttttcttttctaaacaatatactaagatatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgt 487  Q
    ||||||||||||||||||||| ||| || ||||||||||| ||||||||||| | || |||| ||| |||||| |||||||  ||||||||| ||||||     
T  2098319 catttttcttttctaaacaatttaccaacatatgttattg-ttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgc 2098417  T
Q  488 aacgaggctttggagctgaagggtgactttcact 521  Q
    || ||||| |||||||| | || | |||||||||    
T  2098418 aatgaggccttggagctaagggataactttcact 2098451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 279
Target Start/End: Complemental strand, 2136485 - 2136276
Alignment:
Q  71 gctggtgcaggagctatactgcgttctgaaaatgggaatgtggtaccaactttactcaacaattcatctgagctttatattatatg-ttatttgtaaaat 169  Q
    ||||||||||||||| ||||||  |||||| |||||| | ||||| | ||||||  ||||||||||| ||   |||||||||| |  |||||| ||||||    
T  2136485 gctggtgcaggagctttactgctatctgaagatgggagtctggtatctactttatgcaacaattcatttggattttatattatttaattatttataaaat 2136386  T
Q  170 gtagctaactcttatgtttctttgtagctctatcgattccgtgaaggattgggctaccaaacaaataatgttgctgagtatcgcgctttgattttaggaa 269  Q
    ||||  ||  ||||||||||||||||| ||||| |||| || |||||||||||  | | |||| | || |  ||||||||||| || |||||||||||      
T  2136385 gtaggcaatgcttatgtttctttgtagttctatggatttcgcgaaggattggggaatctaacacaaaaggaggctgagtatcgagcattgattttaggtc 2136286  T
Q  270 tgaaacaagc 279  Q
    ||||||||||    
T  2136285 tgaaacaagc 2136276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 2047446 - 2047524
Alignment:
Q  186 tttctttgtagctctatcgattccgtgaaggattgggctaccaaacaaataatgttgctgagtatcgcgctttgatttt 264  Q
    |||||||  ||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||| ||||| |||||    
T  2047446 tttctttacagctctatcgattccgtgaaggactgggctatcaaacaaataacgctgctgagtatcgtgctttaatttt 2047524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 388 - 521
Target Start/End: Original strand, 2106779 - 2106909
Alignment:
Q  388 catttttcttttctaaacaatatactaagatatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgt 487  Q
    ||||||||||||||||||||| ||| || ||  ||||||| ||||||||||||| || |||| ||| |||||| |||||||  ||||||||| ||||||     
T  2106779 catttttcttttctaaacaatttaccaacat--gttattg-ttttgcaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgc 2106875  T
Q  488 aacgaggctttggagctgaagggtgactttcact 521  Q
    || |||||||||||||| | || | |||||||||    
T  2106876 aatgaggctttggagctaagggataactttcact 2106909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 552
Target Start/End: Original strand, 2054364 - 2054499
Alignment:
Q  417 atatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaagggtgactt 516  Q
    ||||||||||||||||||||||||||  ||||||||| || ||| ||||     ||||| ||| ||| || || ||||||||| |||||||||    |||    
T  2054364 atatgttattggttttgcaacagtttctgggttcatggaaaatcaacaaccagtatttatggaacttgtgcaatgaggctttgcagctgaaggaaagctt 2054463  T
Q  517 tcactcatgcaccatccaacacattcgcagggtatt 552  Q
    |||||||| || ||||||||||||||  ||||||||    
T  2054464 tcactcattcagcatccaacacattcctagggtatt 2054499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 2058127 - 2058196
Alignment:
Q  195 agctctatcgattccgtgaaggattgggctaccaaacaaataatgttgctgagtatcgcgctttgatttt 264  Q
    ||||||||||||||||||||||| ||||| | || ||| ||| |  |||||||||||||||||| |||||    
T  2058127 agctctatcgattccgtgaaggactgggcgatcagacagatagttctgctgagtatcgcgctttaatttt 2058196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 2053846 - 2053898
Alignment:
Q  35 gagtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagctat 87  Q
    ||||||||||| |||||   ||||||||| |||||||||||||||||||||||    
T  2053846 gagtttgatggtgcatcgattggaaatcctggaccagctggtgcaggagctat 2053898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 2062385 - 2062433
Alignment:
Q  37 gtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagct 85  Q
    ||||||||| |||||  |||||||||| |||||||||||||||||||||    
T  2062385 gtttgatggtgcatcaggtggaaatcctggaccagctggtgcaggagct 2062433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 2036759 - 2036810
Alignment:
Q  56 ggaaatcccggaccagctggtgcaggagctatactgcgttctgaaaatggga 107  Q
    |||||||| |||||||||||||| ||||| ||||||||| ||||| ||||||    
T  2036759 ggaaatcctggaccagctggtgctggagcaatactgcgtgctgaagatggga 2036810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 2082466 - 2082504
Alignment:
Q  164 taaaatgtagctaactcttatgtttctttgtagctctat 202  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  2082466 taaaatgtagccaactcttatgttcctttgtagctctat 2082504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 508
Target Start/End: Original strand, 2102603 - 2102689
Alignment:
Q  422 ttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaag 508  Q
    ||||||| ||||||||||||| ||||||| || ||  || ||||| |||||||||||| | | || || |||||| |||||||||||    
T  2102603 ttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtggagctgaag 2102689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 2047292 - 2047345
Alignment:
Q  37 gtttgatggcgcatcccgtggaaatcccggaccagctggtgcaggagctatact 90  Q
    ||||||||| |||||  |||| ||||| ||||||||||||||||||||| ||||    
T  2047292 gtttgatggtgcatcaagtgggaatccgggaccagctggtgcaggagctgtact 2047345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 2065558 - 2065607
Alignment:
Q  391 ttttcttttctaaacaatatactaagatatgttattggttttgcaacagt 440  Q
    |||||||| ||||||||| ||| || |||||||||| |||||||||||||    
T  2065558 ttttctttgctaaacaatttaccaacatatgttatttgttttgcaacagt 2065607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 2058333 - 2058369
Alignment:
Q  417 atatgttattggttttgcaacagtttaagggttcatg 453  Q
    ||||||||||||||||||||||||||  |||||||||    
T  2058333 atatgttattggttttgcaacagtttttgggttcatg 2058369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 508
Target Start/End: Complemental strand, 39183084 - 39182998
Alignment:
Q  422 ttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaag 508  Q
    ||||||||||||||||||||| ||||||| || ||  || ||||  |||||||||||| | | ||||| |||||| |||||||||||    
T  39183084 ttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaatttaaggaacctttgtaatgaggctgtggagctgaag 39182998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 835 times since January 2019
Visitors: 1285