View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0089_low_17 (Length: 287)

Name: NF0089_low_17
Description: NF0089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0089_low_17
NF0089_low_17
[»] chr2 (7 HSPs)
chr2 (58-287)||(2320238-2320467)
chr2 (58-287)||(2292918-2293147)
chr2 (58-287)||(2309249-2309478)
chr2 (58-287)||(2302537-2302766)
chr2 (59-243)||(2329808-2329992)
chr2 (95-287)||(2350144-2350336)
chr2 (58-243)||(2326092-2326277)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 58 - 287
Target Start/End: Original strand, 2320238 - 2320467
Alignment:
Q  58 catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320238 catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccat 2320337  T
Q  158 atccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcgccccagagctcttc 257  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  2320338 atcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcgccccgtagctcttc 2320437  T
Q  258 ctacttccataatgttgtccagcaaccaac 287  Q
    ||||||||||||||||||||||||||||||    
T  2320438 ctacttccataatgttgtccagcaaccaac 2320467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 58 - 287
Target Start/End: Original strand, 2292918 - 2293147
Alignment:
Q  58 catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2292918 catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccat 2293017  T
Q  158 atccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcgccccagagctcttc 257  Q
    ||| |||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||||| | ||||||||    
T  2293018 atcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatcttctctgatcgccctacagctcttc 2293117  T
Q  258 ctacttccataatgttgtccagcaaccaac 287  Q
    ||||||||| ||||||||||||||||||||    
T  2293118 ctacttccaaaatgttgtccagcaaccaac 2293147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 58 - 287
Target Start/End: Original strand, 2309249 - 2309478
Alignment:
Q  58 catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2309249 catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccat 2309348  T
Q  158 atccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcgccccagagctcttc 257  Q
    ||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||| | ||||||||    
T  2309349 atcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccataatctctgatcgccctacagctcttc 2309448  T
Q  258 ctacttccataatgttgtccagcaaccaac 287  Q
    ||||||||| ||||||||||||||||||||    
T  2309449 ctacttccaaaatgttgtccagcaaccaac 2309478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 58 - 287
Target Start/End: Original strand, 2302537 - 2302766
Alignment:
Q  58 catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccat 157  Q
    |||| |||||||| | || ||||||| |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  2302537 catcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccac 2302636  T
Q  158 atccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcgccccagagctcttc 257  Q
    ||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||| | |||| |||    
T  2302637 atcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactcagacatctactctgatcgccctaaagcttttc 2302736  T
Q  258 ctacttccataatgttgtccagcaaccaac 287  Q
    ||||||||| ||||||||||||||||||||    
T  2302737 ctacttccaaaatgttgtccagcaaccaac 2302766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 59 - 243
Target Start/End: Original strand, 2329808 - 2329992
Alignment:
Q  59 atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata 158  Q
    |||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | |  |||    
T  2329808 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 2329907  T
Q  159 tccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcg 243  Q
    || |||||||||||||||||||||||   |||| ||||||||| ||||| | |||||||||||||||  || ||||||| |||||    
T  2329908 tcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctgatcg 2329992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 95 - 287
Target Start/End: Original strand, 2350144 - 2350336
Alignment:
Q  95 tcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatccgttctcgaccttccattttcatcaatgaccatg 194  Q
    |||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||||| || | ||| |||  ||||||||||||||||||   ||||||     
T  2350144 tcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccata 2350243  T
Q  195 ctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcgccccagagctcttcctacttccataatgttgtccagcaaccaac 287  Q
    |||| || ||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||| ||  ||| |||  | |||||||||||||    
T  2350244 ctctcgcccaccacgctctcgttcaaaactcagccatcttctctgatcgccctagagctcttcccaccgccaaaatcatctccagcaaccaac 2350336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 2326092 - 2326277
Alignment:
Q  58 catcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccat 157  Q
    ||||||||||| | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  ||    
T  2326092 catcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaat 2326191  T
Q  158 atccgttctcgaccttccattttcatcaatgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctcggatcg 243  Q
    ||| | ||  |||||||||||| ||||   |||| ||||||||| ||||| |  ||||||||||| ||| |  ||||||| |||||    
T  2326192 atcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctctcttctccgatcg 2326277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1157 times since January 2019
Visitors: 1293