View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0089_low_2 (Length: 519)
Name: NF0089_low_2
Description: NF0089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0089_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 89 - 265
Target Start/End: Original strand, 49471899 - 49472071
Alignment:
| Q |
89 |
ccatcacccaccccgtagaaagaatgtgaccttgtgcgactattagtggaaagcgacatgatctgatctggacaattaaatttcaacttgaaggaaagaa |
188 |
Q |
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| T |
49471899 |
ccatcacccaccccgtagaaagaatgtgaccttgtgcgactattagtggaaagcgacatgatctgatctggacaattaaatttcaacttgaaggaaagaa |
49471998 |
T |
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| Q |
189 |
ggaaggaaccccgttttctcctgtactctactgtttctttaattatcactcactcactcctctcactgttaagtttc |
265 |
Q |
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| T |
49471999 |
ggaaggaaccccgttttctcctgtactctactgtttctttaatta----tcactcactcctctcactgttaagtttc |
49472071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 314 - 519
Target Start/End: Original strand, 49472107 - 49472304
Alignment:
| Q |
314 |
gatagaagaagataaatcaaaacaacagtttgaatctttcggatcttgttggtcggtctctcagatctctcaccactgtgttgctgcttctattcctctt |
413 |
Q |
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| T |
49472107 |
gatagaagaagataaatcaaaacaactgtttgaatctttcggatcttgttggtcggtctctcagatctctcaccactatgttgctgctgctattcctctt |
49472206 |
T |
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| Q |
414 |
ttcatagatagatacatacatacatacataacctcaggtttgttttcttctgctcatcgctaacataacattctaatctacttcttttctatcatttcat |
513 |
Q |
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| T |
49472207 |
ttcatag--------atacatacatacataacctcaggtttgttttcttcttctcatcgctaacataacattctaatctacttcttttctatcatttcat |
49472298 |
T |
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