View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0089_low_20 (Length: 266)
Name: NF0089_low_20
Description: NF0089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0089_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 9669687 - 9669813
Alignment:
| Q |
94 |
aaaagtaaaatccttaaattttgtgtacaaaaatcatcctctttttctcatgtctcatttgcattctaccaccatcttcttccatgaacgtccatgtgga |
193 |
Q |
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| T |
9669687 |
aaaagtaaaatccttaaattttgtgtacaaaaatcatcctcttcttctcatgtctcatttgcattctaccaccatcttcttccatgaacgtccatgtgga |
9669786 |
T |
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| Q |
194 |
gtccaattagatgtttaatggtcatgt |
220 |
Q |
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| T |
9669787 |
gtccaattagatgtttaatggtcatgt |
9669813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 9665847 - 9665926
Alignment:
| Q |
32 |
aatatgtagattgtgcttacatacacctaatcttgatgactaaaatgaaagtcaacccctgtaaaagtaaaatccttaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9665847 |
aatatgtagattgtgcttacatacacctaatcttgatgactaaaatgaaagtcaacccctgtaaaagtaaaatccttaaa |
9665926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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