View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0089_low_21 (Length: 249)
Name: NF0089_low_21
Description: NF0089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0089_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 24485374 - 24485162
Alignment:
| Q |
16 |
agagatcatatgggccatggtttgagggtaggcaagtaaagaaggagaatgatcaaaatttaaggaaaccatctcatattgttgtaaaaaagatccaaca |
115 |
Q |
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| T |
24485374 |
agagataatatgaaccatggttggagggtaggaaactaaagaaggagattgctccaaatttaaggaaaccatctcatattgttgtaaaaaagatccaaca |
24485275 |
T |
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| Q |
116 |
attgcggattttacttcgtggaacaccttataatcaacagactacaaatttttgcaaaggttttgtactcagctcatggtcacaagattctacaaatatg |
215 |
Q |
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| T |
24485274 |
attgcgg-gtttacttcgtggaacgtcttataatcaacaaactacaaatttttgcaaaggtttt-tactcagctcatgatctcaagattctacaaatatg |
24485177 |
T |
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| Q |
216 |
attgcgcatcgtttc |
230 |
Q |
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| T |
24485176 |
attgcgcatcgtttc |
24485162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 212
Target Start/End: Complemental strand, 24487651 - 24487490
Alignment:
| Q |
51 |
gtaaagaaggagaatgatcaaaatttaaggaaaccatctcatattgttgtaaaaaagatcc-aacaattgcggattttacttcgtggaacaccttataat |
149 |
Q |
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| T |
24487651 |
gtaaagaaggagattgttcaaaatttaaggaaaccatcccacattattgtaaaaaagatccaaacaattgttga-tttactccctcgaacgccttataat |
24487553 |
T |
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| Q |
150 |
caacagactacaaatttttgcaaaggttttgtactcagctcatggtcacaagattctacaaat |
212 |
Q |
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| T |
24487552 |
caacaaactgtaaattgttacaaaggttgggtactcagcccatgtgcacaagattctataaat |
24487490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 24487249 - 24487341
Alignment:
| Q |
12 |
agaaagagatcatatgggccatggtttgagggtaggcaagtaaagaaggagaatgatcaaaatttaaggaaaccatctcatattgttgtaaaa |
104 |
Q |
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| T |
24487249 |
agaaagagataatatgagacaaggtgggagggtaggcaactaaagaaggagattgtttgaaatttaaggaaagcatcccatgtttttgtaaaa |
24487341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 45210408 - 45210300
Alignment:
| Q |
10 |
agagaaagagatcatatgggccatggtttgagggtaggcaagtaaagaaggagaatgatcaaaatttaaggaaaccatctcatattgttgtaaaaaagat |
109 |
Q |
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| T |
45210408 |
agagaaagagatcatatgggctgtggtgggaggggaagcaactgatcaaggagattgctcagagtttacggaaaccttcccacattgttgtaagaaggat |
45210309 |
T |
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| Q |
110 |
ccaacaatt |
118 |
Q |
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| T |
45210308 |
ccaacaatt |
45210300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 5549689 - 5549776
Alignment:
| Q |
125 |
tttacttcgtggaacaccttataatcaacagactacaaatttttgcaaaggttttgtactcagctcatggtcacaagattctacaaat |
212 |
Q |
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| T |
5549689 |
tttacttcccggaacaccctacaatcaacaaactgcaaattgttgcaaaggtggagtactcagctcatgggcacaggatccaacaaat |
5549776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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