View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0089_low_22 (Length: 227)
Name: NF0089_low_22
Description: NF0089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0089_low_22 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 44088097 - 44087923
Alignment:
| Q |
1 |
catcacactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaattaccagccaaaaaattacca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44088097 |
catctcactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattacca |
44087998 |
T |
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| Q |
101 |
acagaaaatttaactgcatcagaaggattagtaataacatgaaaaccaggccatctaactcttccatcagtatta |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44087997 |
acagaaaatttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
44087923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 44067012 - 44067186
Alignment:
| Q |
1 |
catcacactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaattaccagccaaaaaattacca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44067012 |
catctcactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattacca |
44067111 |
T |
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| Q |
101 |
acagaaaatttaactgcatcagaaggattagtaataacatgaaaaccaggccatctaactcttccatcagtatta |
175 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44067112 |
acagaaaatttaactgcatctgaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
44067186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 44092537 - 44092687
Alignment:
| Q |
25 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaattaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092537 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
44092636 |
T |
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| Q |
125 |
ggattagtaataacatgaaaaccaggccatctaactcttccatcagtatta |
175 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44092637 |
ggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
44092687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 175
Target Start/End: Complemental strand, 7374 - 7224
Alignment:
| Q |
25 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaattaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7374 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
7275 |
T |
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| Q |
125 |
ggattagtaataacatgaaaaccaggccatctaactcttccatcagtatta |
175 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7274 |
ggattagtaataacatgaaaaccaggccatttaactcttccatcagtatta |
7224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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