View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0089_low_3 (Length: 417)
Name: NF0089_low_3
Description: NF0089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0089_low_3 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 30 - 407
Target Start/End: Original strand, 31523419 - 31523796
Alignment:
| Q |
30 |
tattacagttggaattctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31523419 |
tattacagttggaattctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatg |
31523518 |
T |
|
| Q |
130 |
gaggctgtagcttcatctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccacctt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31523519 |
gaggctgtagcttcatctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccacctt |
31523618 |
T |
|
| Q |
230 |
catcactcactgcaaatgatgtcaaaattagatttcaatgaagggcttattggttgcaaaaccctctgatggaaggcgtgtttggtgtccgacacgacac |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31523619 |
catcactcactgcaaatgatgtcaaaattagatttcaatgaagggcttattggttgcaaaaccctctgatggaaggcgtgtttggtgtccgacacgacac |
31523718 |
T |
|
| Q |
330 |
aagtgattacattcaattaattaannnnnnnnnnnnnnnatcagtgtttatgtgccagtgtcgtgtccggtgtctgtg |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31523719 |
aagtgattacattcaattaattaattttttaaattttttatcagtgtttatgtgccagtgtcgtgtccggtgtctgtg |
31523796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 30 - 245
Target Start/End: Complemental strand, 5316845 - 5316630
Alignment:
| Q |
30 |
tattacagttggaattctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatg |
129 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5316845 |
tattacagttggaattctgtgagcaacggttataaccgtgcattctgaaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatg |
5316746 |
T |
|
| Q |
130 |
gaggctgtagcttcatctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccacctt |
229 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| |||||||||| ||||| ||||||||||||||||||| ||| | || || ||||||||||||||||||| |
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|
| T |
5316745 |
gaggcagtagcttcatccagaactagaatcctgttcctcttaagtagaactcttccaagacaaaacaattgcctttgtcccaagctccaatttccacctt |
5316646 |
T |
|
| Q |
230 |
catcactcactgcaaa |
245 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
5316645 |
catcactcactgcaaa |
5316630 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 5279250 - 5279465
Alignment:
| Q |
30 |
tattacagttggaattctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatg |
129 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||| || ||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
5279250 |
tattacagttggaactctgtgagccacagttataactgtgcattcttcgaattcttgtctaattactctttgtagaattgcatctgtggctgagtcaatg |
5279349 |
T |
|
| Q |
130 |
gaggctgtagcttcatctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccacctt |
229 |
Q |
| |
|
|| ||||| |||||||||||||| | |||| | || || || ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
5279350 |
gatgctgttgcttcatctagaacaagaattctatttcttttaagtagaactcttccaaggcaaaacagttgccgctgtcctaagctccaatttccacctt |
5279449 |
T |
|
| Q |
230 |
catcactcactgcaaa |
245 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
5279450 |
catcactcactgcaaa |
5279465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 5310193 - 5309982
Alignment:
| Q |
34 |
acagttggaattctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggagg |
133 |
Q |
| |
|
|||||||||| ||||||||| | ||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| |||| |
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|
| T |
5310193 |
acagttggaactctgtgagccacagttatgactgtgcattctgcaaattcttgtctaattactctttgtagtattgcatctgtggaagagtcaatagagg |
5310094 |
T |
|
| Q |
134 |
ctgtagcttcatctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatc |
233 |
Q |
| |
|
| ||||||||||| ||||| | ||||||||| ||||| ||||| ||||||||||||||||||| ||| | || | ||||||||||||||||||||||| |
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|
| T |
5310093 |
cagtagcttcatccagaacaagaattttgtttctcttaagtagaactcttccaagacaaaacaattgcctttgtctcaagctccaatttccaccttcatc |
5309994 |
T |
|
| Q |
234 |
actcactgcaaa |
245 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5309993 |
actcactgcaaa |
5309982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 14946251 - 14946466
Alignment:
| Q |
30 |
tattacagttggaattctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatg |
129 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| || ||||||||| |||| |||||||| |||| |||||||||||||||||||||||| || |||||| |
|
|
| T |
14946251 |
tattacagttggaactctgtgagcaacagttataactgtgcattcttcaaactcttgtctgattattctttgtagaatggcatctgtggctgaatcaatg |
14946350 |
T |
|
| Q |
130 |
gaggctgtagcttcatctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccacctt |
229 |
Q |
| |
|
|| || |||||||| || | ||| | ||||||||||||||| ||||| |||||||| || ||||||| |||||| || || ||||||||||||||||||| |
|
|
| T |
14946351 |
gatgcagtagcttcgtccaaaacaagaattttgttcctcttaagtagaactcttccgaggcaaaacaattggcgttgtcccaagctccaatttccacctt |
14946450 |
T |
|
| Q |
230 |
catcactcactgcaaa |
245 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14946451 |
catcactcactgcaaa |
14946466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 5286977 - 5287192
Alignment:
| Q |
30 |
tattacagttggaattctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatg |
129 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||| || |||||||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
5286977 |
tattacagttggaactctgtgagccacagttataactgtgcattctgaaaattcttgtctaattactctttgtagaattgcatccgtcgcagagtcaatg |
5287076 |
T |
|
| Q |
130 |
gaggctgtagcttcatctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccacctt |
229 |
Q |
| |
|
|| ||||| |||||||| ||||| | |||| |||| ||||| ||||| ||||||||||| ||||||| ||| | || || ||||||||||||||||||| |
|
|
| T |
5287077 |
gatgctgttgcttcatccagaacaagaattctgtttctcttaagtagaactcttccaaggcaaaacaattgcctttgtcccaagctccaatttccacctt |
5287176 |
T |
|
| Q |
230 |
catcactcactgcaaa |
245 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
5287177 |
catcgctcactgcaaa |
5287192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 15128829 - 15128616
Alignment:
| Q |
30 |
tattacagttggaattctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatg |
129 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| || ||||||||| |||||||||||||||||| |||||||||||| ||||||||||| || |||||| |
|
|
| T |
15128829 |
tattacagttggaactctgtgagcaacagttataactgtgcattcttcaaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatg |
15128730 |
T |
|
| Q |
130 |
gaggctgtagcttcatctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccacctt |
229 |
Q |
| |
|
|| || ||||||||||| | ||| | |||| ||||||| || ||||| |||||||| || ||||| | |||||| || || ||||||||||||||||||| |
|
|
| T |
15128729 |
gatgcagtagcttcatccaaaacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaatttccacctt |
15128630 |
T |
|
| Q |
230 |
catcactcactgca |
243 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15128629 |
catcactcactgca |
15128616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 5347939 - 5348146
Alignment:
| Q |
34 |
acagttggaattctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggagg |
133 |
Q |
| |
|
|||||||||| ||| ||||| | ||||| || |||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
5347939 |
acagttggaactctatgagctacagttataactgtgcattctgcaaattcttgtctaattattttttgtagaatagcatctgtggcagaatcaatagagg |
5348038 |
T |
|
| Q |
134 |
ctgtagcttcatctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatc |
233 |
Q |
| |
|
| ||||||||||| | ||||| |||||| || || || || || ||||||||||| ||||||| ||| | || || | |||||||||| | ||||||| |
|
|
| T |
5348039 |
cagtagcttcatccaaaactagaattttatttcttttaagaaggactcttccaaggcaaaacaattgtctttggcccatgctccaattttccccttcatt |
5348138 |
T |
|
| Q |
234 |
actcactg |
241 |
Q |
| |
|
|||||||| |
|
|
| T |
5348139 |
actcactg |
5348146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 38957321 - 38957375
Alignment:
| Q |
298 |
atggaaggcgtgtttggtgtccgacac-gacacaagtgattacattcaattaatt |
351 |
Q |
| |
|
||||||||||||| | |||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
38957321 |
atggaaggcgtgtctagtgtacgacactgacacatgtgattacattcaattaatt |
38957375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 683115 - 683081
Alignment:
| Q |
314 |
gtgtccgacacgacacaagtgattacattcaatta |
348 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
683115 |
gtgtccgacacgacacatgtgattacattcaatta |
683081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 38612911 - 38612960
Alignment:
| Q |
302 |
aaggcgtgtttggtgtccgacacgacacaagtgattacattcaattaatt |
351 |
Q |
| |
|
||||| ||||||||||||||||||||||| | || |||||||| |||||| |
|
|
| T |
38612911 |
aaggcatgtttggtgtccgacacgacacatgcgagtacattcagttaatt |
38612960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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