View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0089_low_9 (Length: 340)
Name: NF0089_low_9
Description: NF0089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0089_low_9 |
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| [»] scaffold1176 (1 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold1652 (3 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 83 - 334
Target Start/End: Complemental strand, 37242336 - 37242097
Alignment:
| Q |
83 |
atcatcatctcccgattacactccatctcctgcgggatctcccttggctatctcaccggcggtgtcttctcccgttcctttgatgaacgctgcatctcct |
182 |
Q |
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|||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
37242336 |
atcatcatctcctgttgccactccatctcctgcgggatctcccttggctatctcaccggcggtatcttctcccgttcctttgatgaacgctccatctcct |
37242237 |
T |
|
| Q |
183 |
tcaccgttcgcagttaactatccaacatctcctcctcctgcttcctttggttctcccgctttcgctcctgcttctcctgttgccgctcctgcagttactc |
282 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37242236 |
tcaccgttcgcagttaactatccaacatctcctcctcctgcttcctttggtt------------ctcctgcttctcctgttgccgctcctgcagttactc |
37242149 |
T |
|
| Q |
283 |
catcgccgatctcaactcctccatctcaagcaccatcacctgcgattgctcc |
334 |
Q |
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|
||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37242148 |
cattgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctcc |
37242097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 37245198 - 37245114
Alignment:
| Q |
250 |
ctgcttctcctgttgccgctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatcacctgcgattgctcc |
334 |
Q |
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|||||||||| |||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||||| |||||| |||| |
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| T |
37245198 |
ctgcttctcccgttgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatcaccagcgatttctcc |
37245114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 37241984 - 37241923
Alignment:
| Q |
258 |
cctgttgccgctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatc |
319 |
Q |
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|||| |||||||||||| ||||||||||| | ||||| ||||||||| || |||||||||| |
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| T |
37241984 |
cctgctgccgctcctgctattactccatcgtcaatctctactcctccaactaaagcaccatc |
37241923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 37232828 - 37232772
Alignment:
| Q |
264 |
gccgctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatca |
320 |
Q |
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||||||||||| ||||||||||| ||||||| |||||||| || ||||||||||| |
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| T |
37232828 |
gccgctcctgctgttactccatcatcgatctccactcctcctgctgaagcaccatca |
37232772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 37232873 - 37232817
Alignment:
| Q |
198 |
aactatccaacatctcctcctcctgcttcctttggttctcccgctttcgctcctgct |
254 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||| ||||| |||||||||| |
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| T |
37232873 |
aactctccaccatctcctcctcctgcttcctctggttcacccgccgccgctcctgct |
37232817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 37253186 - 37253094
Alignment:
| Q |
134 |
ctcaccggcggtgtcttctcccgttcctttgatgaacgctgcatctccttcaccgttcgcagttaactatccaacatctcctcctcctgcttc |
226 |
Q |
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||||||||||| ||| ||||| | ||| ||| ||||||| ||||||||||||| | || | |||| |||| ||||||||||||||||||| |
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| T |
37253186 |
ctcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcctgcttc |
37253094 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 14351810 - 14351703
Alignment:
| Q |
147 |
tcttctcccgttcctttgatgaacgctgcatctccttcaccgttcgcagttaactatccaacatctcctcctcctgcttcctttggttctcccgctttcg |
246 |
Q |
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||||||||||||||| | ||||| ||| |||||||||||| ||| || |||||| ||| ||||| |||||| |||||||||||||||||||||| ||| |
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| T |
14351810 |
tcttctcccgttcctgttatgaatgctccatctccttcactgtttgccattaactctccgacatcctctcctcatgcttcctttggttctcccgctgtcg |
14351711 |
T |
|
| Q |
247 |
ctcctgct |
254 |
Q |
| |
|
|||||||| |
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| T |
14351710 |
ctcctgct |
14351703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 14248455 - 14248377
Alignment:
| Q |
256 |
ctcctgttgccgctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatcacctgcgattgctcc |
334 |
Q |
| |
|
|||||| ||| |||||||| || ||||||| | ||||||| |||||||||||||||| |||||| ||||||||| |||| |
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| T |
14248455 |
ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc |
14248377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 14248293 - 14248241
Alignment:
| Q |
268 |
ctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatca |
320 |
Q |
| |
|
|||||||| ||||||||||| ||||||| || ||||||||| ||||||||||| |
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| T |
14248293 |
ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatca |
14248241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 112 - 190
Alignment:
| Q |
256 |
ctcctgttgccgctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatcacctgcgattgctcc |
334 |
Q |
| |
|
|||||| ||| |||||||| || |||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
112 |
ctcctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttctcc |
190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 3550 - 3466
Alignment:
| Q |
250 |
ctgcttctcctgttgccgctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatcacctgcgattgctcc |
334 |
Q |
| |
|
||||| ||| || |||| ||||||| || ||||||||| ||||||| ||||||||||||||||||||| | ||||||||| |||| |
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|
| T |
3550 |
ctgctcctcttgctgccactcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttctcc |
3466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 3353 - 3297
Alignment:
| Q |
264 |
gccgctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatca |
320 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| || ||||||||| ||||||||||| |
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|
| T |
3353 |
gccgctcctgccattactccatcggcgatctctacccctccatctaaagcaccatca |
3297 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 338 - 409
Alignment:
| Q |
263 |
tgccgctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatcacctgcgattgctcc |
334 |
Q |
| |
|
|||||||||||| || ||||||||| |||| || |||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
338 |
tgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccatagcctgcgatttctcc |
409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 277 - 333
Alignment:
| Q |
280 |
ctccatcgccgatctcaactcctccatctcaagcaccatcacctgcgattgctcctc |
336 |
Q |
| |
|
|||||||| ||||||| || |||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
277 |
ctccatcgtcgatctctacccctccatctcaagcaccatcgcctacgatttctcctc |
333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 170 - 245
Alignment:
| Q |
254 |
ttctcctgttgccgctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatcacctgcgatt |
329 |
Q |
| |
|
|||||| | ||| |||||||| || |||||||| ||||||| |||||||||||||||| |||||| ||| ||||| |
|
|
| T |
170 |
ttctcccgctgctgctcctgctgtctctccatcgtcgatctctactcctccatctcaagtaccatcgcctacgatt |
245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 165271 - 165349
Alignment:
| Q |
256 |
ctcctgttgccgctcctgcagttactccatcgccgatctcaactcctccatctcaagcaccatcacctgcgattgctcc |
334 |
Q |
| |
|
|||||| ||| |||||||| || ||||||| | ||||||| |||||||||||||||| |||||| ||||||||| |||| |
|
|
| T |
165271 |
ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc |
165349 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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