View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0090_low_1 (Length: 619)
Name: NF0090_low_1
Description: NF0090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0090_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 56 - 500
Target Start/End: Complemental strand, 15936133 - 15935689
Alignment:
| Q |
56 |
ttaattattgaaaatatttgattggctgcttttaagggtgaggtgttaggttcggcttcacgtaattagggnnnnnnngtttgttatatccaaaacagta |
155 |
Q |
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| T |
15936133 |
ttaattattgaaaatatttgattggctgcttttaagggtgaggtgttaggttcggcttcacgtaattagggtttttttgtttgttatatccaaaacagta |
15936034 |
T |
|
| Q |
156 |
gggttaaatactcatactcaaatatcacgtaacctaacctaacctgcctgctaaacaaacacaaacagatacaggatggcttccggctccggcaacgtcg |
255 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15936033 |
gggttaaatactcatactaaaatatcacgtaacttaacctaacctgcctgctaaacaaacacaaacagatacaggatggcttccggctccggcaacgtcg |
15935934 |
T |
|
| Q |
256 |
tggacgaaaagttcgacccactcattcggcaagtggccatcagattggcaaacaaggtcccttacctccccaaatttgtgatatctcgtctccccgacga |
355 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |
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| T |
15935933 |
tggacgaaaagttcgacccgctcattcggcaagtggccatcagattggcaaacaaggtctcttacctccccaaatttgtaatatctcgtctctccgacga |
15935834 |
T |
|
| Q |
356 |
tgaattatacgagctcctcggcaaaaagctttctaacctcaacgaaggcgaagcagatcgcatcctcgaagcggagttacaaaccatgttcgctcctttg |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15935833 |
tgaattatacgagctcctcggcaaaaagctttctaacctccccgaaggcgaagcagatcgcatcctcgaagcggagttacaaaccatgttcgctcctttg |
15935734 |
T |
|
| Q |
456 |
ggagccgttctatctttccttttccctcgtacaaatcgaattact |
500 |
Q |
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| T |
15935733 |
ggagccgttctatctttccttttccctcgtacaaatcgaattact |
15935689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 529 - 591
Target Start/End: Complemental strand, 15935660 - 15935598
Alignment:
| Q |
529 |
aaatactcgagcccgttgctttgaaggattttattatttacagtttgtactcttactctttct |
591 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15935660 |
aaatactcgagccagttgctttgaaggattttattatttacagtttgtacttttactctttct |
15935598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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