View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0090_low_10 (Length: 215)
Name: NF0090_low_10
Description: NF0090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0090_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 44554493 - 44554617
Alignment:
| Q |
1 |
gcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgatacttataaacattctcaaacttct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44554493 |
gcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgatacttataaacattctcaaacttct |
44554592 |
T |
|
| Q |
101 |
ctttgcatttctttgaacttctgtg |
125 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
44554593 |
ctttgcatttctttgaacttctgtg |
44554617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 44532830 - 44532706
Alignment:
| Q |
1 |
gcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgatacttataaacattctcaaacttct |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||| || || || |||||||| |||| || ||| ||||||||||| ||||||||||| || ||||| ||||| |||| |
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| T |
44532830 |
gcttgtaattgatcaaaaaatctataggtttttccttctgatttcccacttctaccttctttggttcttttgtgatacttgtatacattttcaaatttct |
44532731 |
T |
|
| Q |
101 |
ctttgcatttctttgaacttctgtg |
125 |
Q |
| |
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| ||||| |||||||| |||||||| |
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| T |
44532730 |
ccttgcacttctttgagcttctgtg |
44532706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 12682184 - 12682075
Alignment:
| Q |
1 |
gcttctaattgatcaaaaaatcgataagtcttaccatctgattttccacctcgaccatctttggttctcttgtgatacttataaacattctcaaacttct |
100 |
Q |
| |
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|||| |||||||||||| |||| |||||| |||||||||||||| ||||||| || |||||||||||||||||||| || ||||||||||||||||| | |
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| T |
12682184 |
gcttgtaattgatcaaagaatctataagttttaccatctgatttaccacctcttccttctttggttctcttgtgatatttgtaaacattctcaaactttt |
12682085 |
T |
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| Q |
101 |
ctttgcattt |
110 |
Q |
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|||||||||| |
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|
| T |
12682084 |
ctttgcattt |
12682075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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