View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0090_low_3 (Length: 393)
Name: NF0090_low_3
Description: NF0090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0090_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 192 - 383
Target Start/End: Original strand, 1396029 - 1396218
Alignment:
| Q |
192 |
ataaaattaaactgatatcnnnnnnngtggctgaaaagaaaccaaatctagtttagattttgatatacacacacaaatggtgggtgaaccctacattatt |
291 |
Q |
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| T |
1396029 |
ataaaattaaactgatatccatttttgtggctgaaaagaaaccaaatctggtttagattttgatatacac--acaaatggtgggtgaaccctacattatt |
1396126 |
T |
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| Q |
292 |
ttagggtaatcttcttgttgagtgtttaggtttttgccatcaataatcctacatgtgttttcttgttactctcgacctctgtcgcctctctg |
383 |
Q |
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| T |
1396127 |
ttagggtaatcttcttgttgagtgtttaggtttttgccatcaataatcctacatgtgttttcttgttactctcgacctttgtcgcctctctg |
1396218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 218 - 368
Target Start/End: Original strand, 1407076 - 1407222
Alignment:
| Q |
218 |
gtggctgaaaagaaaccaaatctagtttagattttgatatacacacacaaatggtgggtgaaccctacattattttagggtaatcttcttgttgagtgtt |
317 |
Q |
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| T |
1407076 |
gtggctgaaaagaaaccaaatctggtttagattttgatatacac----aaatggtgggtgaaccctacattattttagggtaatcttcttgttgagtgtt |
1407171 |
T |
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| Q |
318 |
taggtttttgccatcaataatcctacatgtgttttcttgttactctcgacc |
368 |
Q |
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| T |
1407172 |
taggtttttgccatcaataatcctacatgtgttttcttgttactctcgacc |
1407222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 1406916 - 1407064
Alignment:
| Q |
30 |
cttgcggttgtctgatcatgcgttgttgtttagttcattgagtggtttctctagaagaatgtgactatatatgcatannnnnnnggtttgggctatttag |
129 |
Q |
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| T |
1406916 |
cttgcggttgtctgatcatgcgttgttgtttagttcattgagtggtttctctagaagaatgtgactatctatgcatatttttttggtttgggttatttgg |
1407015 |
T |
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| Q |
130 |
cgagaacgaaattcacgttgttgtctttagcacaaggaacaggtagtgt |
178 |
Q |
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| T |
1407016 |
cgagaacgaaattcacgttgttgtctttagcacaaggaacaggtagtgt |
1407064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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