View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0090_low_5 (Length: 298)
Name: NF0090_low_5
Description: NF0090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0090_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 47 - 296
Target Start/End: Complemental strand, 1396486 - 1396236
Alignment:
| Q |
47 |
tcatcgtataacatgaatacaaacattgactgatatctgctttagtcaatttgggtaagct-taaggtttcaaactattgaattgtaagagaatcaagct |
145 |
Q |
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| T |
1396486 |
tcatcatataacatgaatacaaacattgactgatatctgctttagtcaatttgggtaagctataaggtttcaaactattgaattttaagagaatcaagct |
1396387 |
T |
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| Q |
146 |
attcctcagaatgaatgcatatatcagacaatcgtagatcctcgagaattagagatccagctagcagcaacatgaaatcttgaattccatttaatttaat |
245 |
Q |
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| T |
1396386 |
attcctcagaatgaatgtatatatcagacaatcgtagatcctcgagaattagagatccagctagaagcaacatgaaatcttgaattccatttaatttaat |
1396287 |
T |
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| Q |
246 |
gagttgcaacgaaagggttttgagtgatggaaatccaaatccaatagaaga |
296 |
Q |
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| T |
1396286 |
gagttgcaacgaaagggttttgagtgatggaaatccaaatccaatagaaga |
1396236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 47 - 298
Target Start/End: Complemental strand, 1407497 - 1407236
Alignment:
| Q |
47 |
tcatcgtataacatgaatacaaaca----ttgactgatatctgctttagtcaatttgggtaagcttaaggtttcaaactattgaattgtaagagaatcaa |
142 |
Q |
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| T |
1407497 |
tcatcatataacatgaatacaaacaaacattgaccgatatctgctttagtcaatttgggtaagcttaaggtttcgaactattgaatggtaagagaatcaa |
1407398 |
T |
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| Q |
143 |
gctattcctcagaatgaatgcatatatcagacaatcgtagatcctcgagaattagagatccagctagcagcaacatgaaatcttgaattccatttaatt- |
241 |
Q |
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| T |
1407397 |
gctattccttagaatgaatgtatatatcagacaatcgtagatcctcgagaattagagatccagctagaagcaacatgaaatcttgaattccatttaattt |
1407298 |
T |
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| Q |
242 |
-----taatgagttgcaacgaaagggttttgagtgatggaaatccaaatccaatagaagaaa |
298 |
Q |
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| T |
1407297 |
aattttaatgagttgcaatgaaagggttttgagtgatggaaatccaaatccaatagaagaaa |
1407236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 298
Target Start/End: Original strand, 1025559 - 1025594
Alignment:
| Q |
263 |
ttttgagtgatggaaatccaaatccaatagaagaaa |
298 |
Q |
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| T |
1025559 |
ttttgagtgatggaaatccaaatccaatggaagaaa |
1025594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 35767662 - 35767616
Alignment:
| Q |
252 |
caacgaaagggttttgagtgatggaaatccaaatccaatagaagaaa |
298 |
Q |
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| T |
35767662 |
caaccaaagggttttgagtgatggaaatccaaatccaattgaagaaa |
35767616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 8316067 - 8316029
Alignment:
| Q |
252 |
caacgaaagggttttgagtgatggaaatccaaatccaat |
290 |
Q |
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| T |
8316067 |
caaccaaagggttttgagtgatggaaatccaaatccaat |
8316029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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