View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0090_low_7 (Length: 274)
Name: NF0090_low_7
Description: NF0090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0090_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 30895486 - 30895721
Alignment:
| Q |
12 |
atgaatagggttgaaatgaagtttctttttcccgctaggtttagccaatcaacaagaacaaaaacaatggaaaggtagataatgaactaaattataatca |
111 |
Q |
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| T |
30895486 |
atgaatagggttgaaatgaagtttattttccctgctaggtttagccaatcaacaagaacaaaaacaatggaaaggtagataatgaactaaattataatca |
30895585 |
T |
|
| Q |
112 |
aactcagattactgataaaccatatagtagtgtaaagattattgtaca--aacaaatgctgttgaaataccatcttctatccatgaatgtcagtttattt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
30895586 |
aactcagattactgataaaccatatagtagtgtaaagattattgtacaataacaaatgctgttgaaataccatcttctaaccatgaatgtccgtttattt |
30895685 |
T |
|
| Q |
210 |
atttacaagccaatcattgctaattccagcatatat |
245 |
Q |
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||||||||| ||||||||| |||||||||||||||| |
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| T |
30895686 |
atttacaagtcaatcattgttaattccagcatatat |
30895721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 55 - 237
Target Start/End: Complemental strand, 30716757 - 30716575
Alignment:
| Q |
55 |
gccaatcaacaaga-acaaaaacaatggaaaggtagataatgaactaaattataatcaaactcagattactgataaaccatatagtagtgtaaagattat |
153 |
Q |
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| T |
30716757 |
gccaagcaacaagagacaaaaacaatggaaaggtagataatgaactaaataacaatcaaaatcagattacctataaaccata---tagtgtaaagattat |
30716661 |
T |
|
| Q |
154 |
tgtaca--aacaaatgctgttgaaataccatcttctatccatgaatgtcagtttatttatttacaagccaatcattgctaattcca |
237 |
Q |
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| T |
30716660 |
tgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaaaccaatcactgctaattcca |
30716575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 55 - 245
Target Start/End: Complemental strand, 28119315 - 28119127
Alignment:
| Q |
55 |
gccaatcaacaaga-acaaaaacaatggaaaggtagataatgaactaaattataatcaaactcagattactgataaaccatatagtagtgtaaagattat |
153 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||| ||||||||||||| |
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| T |
28119315 |
gccaagcaacaagagacaaaaacaatggaaaggtagataatgaactaaataacaatcaaaatcagattacctataaaccata-----gtgtaaagattat |
28119221 |
T |
|
| Q |
154 |
tgtacaa--acaaatgctgttgaaataccatcttctatccatgaatgtcagtttatttatttacaagccaatcattgctaattccagcatatat |
245 |
Q |
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||||||| |||||| || |||||||||||||||||| | ||||||| |||||||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
28119220 |
tgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcaagtttatttattcacaaaccaatcactgctaattccagcatatat |
28119127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 971151 - 971313
Alignment:
| Q |
55 |
gccaatcaacaaga-acaaaaacaatggaaaggtagataatgaactaaattataatcaaactcagattactgataaaccatatagtagtgtaaagattat |
153 |
Q |
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||||| |||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
971151 |
gccaagcaacaagagacaaaaacaatcgaaaggtagataatgaactaaataacaatcaaaatcagattacctataaaccata---tagtgtaaagattat |
971247 |
T |
|
| Q |
154 |
tgtaca--aacaaatgctgttgaaataccatcttctatccatgaatgtcagtttatttatttacaa |
217 |
Q |
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|||||| ||||||| || |||||||||||||||||| | ||||||| ||||||||||| |||| |
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| T |
971248 |
tgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaa |
971313 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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