View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0090_low_8 (Length: 248)
Name: NF0090_low_8
Description: NF0090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0090_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 52834761 - 52834979
Alignment:
| Q |
1 |
tttagtcattgatacagaaaatgaaaagggaagagaatgaccaacatacatctcccagatgatgcctgaattgggaagaagaaccagcagtttcctttag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52834761 |
tttagtctttgatacagaaaatgaaaagggaagagaatgaacaacatacatctcccagatgatgcctgaattgggaagaagaaccagcagtttcctttag |
52834860 |
T |
|
| Q |
101 |
gccatgccaggcttgttcatccacttcgaggaatctgttaatttttaccacagtttcttatcagagaaggaggatgtcaagttattccataagttcttgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52834861 |
gccatgccaggcttgttcatccacttcgaggaatctgttaatttttaccacagtttcttatcagagaaggaggatgtcaagttattccataagttcttgt |
52834960 |
T |
|
| Q |
201 |
attaatctaatttttaaat |
219 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
52834961 |
attaatctaatttttaaat |
52834979 |
T |
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